| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2407 |
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| Symbol | |
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| ID | 4921797 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 2824745 |
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| End bp | 2825776 |
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| Gene Length | 1032 bp |
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| Protein Length | 343 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640163997 |
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| Product | putative periplasmic protease |
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| Protein accession | YP_001094532 |
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| Protein GI | 127513335 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0616] Periplasmic serine proteases (ClpP class) |
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| TIGRFAM ID | [TIGR00706] signal peptide peptidase SppA, 36K type |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00000170796 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGGAATTTT TGTACGAGTA TGGACTCTTT CTGGCAAAAG CCGTCACCAT AGTGGTGGCT
ATCGTCGCCG TTGTGGTGTT GGTGCTGGCA TCGGCGGTGA AGCAGAAGGC CGATAAGGGT
GAGCTTAAGC TGACCAATGT GTCTGAGGAG CTTAAGGACC TCAAACATGA CTTGAAGGAA
GAACTGCTGA GCAAGAAACA GTTTAAGGCC TACGAGAAGG GCCTCAAGGC TGAGGCGAAG
GCCAAGGAGA AGGCTGAGAA GGCCGATGGC GAAGCCGCGC CTACGCCTCG CGTATTTGTT
ATCGACTTCA AGGGCAGCAT AGATGCACAT GAGGTGGCGT CACTGCGAGA AGAGATCAGC
GCCATCCTGG CTATTGCCGA GCCAGGCGAC GAAGTGGTGG TCAACGTCGA GAGTGGCGGC
GGCATGGTCC ATGGCTATGG CTTGGCAGCC AGCCAGCTCG ACAGACTGCG CAGCGCCGAG
ATCCCATTGA CCATCTGTGT CGACAAGGTG GCCGCGAGCG GTGGCTATAT GATGGCCTGT
GTGGCCAATA CCATCTATGC CGCACCCTTT GCCATCGTAG GTTCTATCGG TGTGGTCGCG
CAGATCCCTA ACTTCAATCG TCTGCTGAAG AAGCATGATA TCGATTATGA GCAGCACACC
GCCGGTGACT TCAAGCGTAC CCTGACCCTG TTTGGTGAAA ACACCGACGA AGGAAGACAG
AAGTTCCAGG AAGAGCTGGA AGAGACCCAT GTACTGTTTA AAGCCTTCAT CAGCAAGTAC
CGTCCTACAT TGGACATCGC CAAGGTGGCG ACCGGTGAGC ACTGGTATGG TCAGCAGGCG
TTGGATCTTG GTCTGGTCGA TGGCCTCTCT ACCAGTGATG ACGTGGTGAT GAAGCTTGCC
GAAGAGAAGA CAGTGATCAA GGTTCGCTAT CAGCTGAAGA AGAAGATTGC CGACAAGCTT
GCCCACAGCG CCTCACTGGC GGTCAATGCC GTGTTCAATC GCTTGGCGGA AAAGAATCAA
CCGCTTAACT AA
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| Protein sequence | MEFLYEYGLF LAKAVTIVVA IVAVVVLVLA SAVKQKADKG ELKLTNVSEE LKDLKHDLKE
ELLSKKQFKA YEKGLKAEAK AKEKAEKADG EAAPTPRVFV IDFKGSIDAH EVASLREEIS
AILAIAEPGD EVVVNVESGG GMVHGYGLAA SQLDRLRSAE IPLTICVDKV AASGGYMMAC
VANTIYAAPF AIVGSIGVVA QIPNFNRLLK KHDIDYEQHT AGDFKRTLTL FGENTDEGRQ
KFQEELEETH VLFKAFISKY RPTLDIAKVA TGEHWYGQQA LDLGLVDGLS TSDDVVMKLA
EEKTVIKVRY QLKKKIADKL AHSASLAVNA VFNRLAEKNQ PLN
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