Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_2381 |
Symbol | |
ID | 4921445 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 2786733 |
End bp | 2787977 |
Gene Length | 1245 bp |
Protein Length | 414 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 640163971 |
Product | RDD domain-containing protein |
Protein accession | YP_001094506 |
Protein GI | 127513309 |
COG category | [S] Function unknown |
COG ID | [COG1714] Predicted membrane protein/domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.000210385 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCCGAGCA CAGCGCATCA ATCTGCGAGC CCTGATTCAG CTAAAAAATC TAAGACAAAA GCTCCAAACT CCAAAGATCG TAAGACCAAA GATCCTAAGA GCAAGGACCC TAAGACAATA GTCACCCCCT TCGCCTTTCA TGTAGCGCCA GAGCTGCTCT ATACCCCGCT GGCCTCGCCA CTCAAGCGTG GCCTAGCGAT GCTGATCGAT GGTTTGCTGA TTAGCGTATT AGCTGAGCAG GCCGGCGCCC TGTTTATTCT CCTGGTCGGT TTAACCTTAG TGATTGAGCG TCGCAGCCAT CAACTGGGCA AGGCTTTGAA GTGGGGCCTC TATCTTGCCA TGCTCTTGAT GACAATCTGG GTCACCAGCG ACAACATCAT CTCCTACGGC GATGCGGATA AAGGTAAAGA CGGGGAGAAA GTGGCGCAAA CTACGGGTCA GCAGGCGGAG TCGCTGAATG CACTTAAGGT CATGCCGCAG ATAATAGCCC TTAGCCTGTG TGAGGAGGCA AGCTGCGCCG ACGAGAAATT AACTAAGCTG CTTAGCGCGA TGGACAGCTT AGAGGCAAGC GACAGGGAGA AAGTGGCGCT GGCATCTCAG CTGATCGACG AGCTGTCTCT GCCGAGTCAG GAAAAACAAG CACTGATGCA GCGCCTAAAG CAGGCTTACC CTAATGGCTT TGCTGTAAAG CAAGGCGAGG TTAAGCAAGA CGCGGTGAAG CCAGAAGCAC TGCAGCAAGA AGCACTGAAG CAAGAGACGG TGAAACAAAG CACGGTGGAG CAAGAGGCAA GCGAGTCAAG CCAACAAGCC TTAATGGATG AGCCAGCAGC GCTCGGGATT GACCCGGATA AACTTGATGA GGAGGAAGAT AAGCCTTCGC CCTACAGCCT GCTGGAATGG GCCAAAGGCA TCTTAAACGA TCTCGGGCTC GGCTTTGGCT GGGCCGCCTT CTACTTCACT ATCTTTACCG CCTGGTTCGA TGGTCAGACA CTGGGTAAGA AGCTGCTCAA CATTCGGGTG GTGCCGCTGG ATGCCTCATC TATCTCGTTA TGGGATGCCT TTGGGCGATA TGGTGGTTAT GGCGCCGGTT TCGCCACAGG TTTACTCGGA TTCCTACAGA TATATTGGGA TGCTAACCGT CAGGCGATTC AAGATAAGAT CTCAGAAACT GTCGTTGTTG ATCTCTCTAA GCCAAGAGAA ATCCCAGCAG AGGAGAGCTC CCCTGAGGTA TACGGTGGCG CCTGA
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Protein sequence | MPSTAHQSAS PDSAKKSKTK APNSKDRKTK DPKSKDPKTI VTPFAFHVAP ELLYTPLASP LKRGLAMLID GLLISVLAEQ AGALFILLVG LTLVIERRSH QLGKALKWGL YLAMLLMTIW VTSDNIISYG DADKGKDGEK VAQTTGQQAE SLNALKVMPQ IIALSLCEEA SCADEKLTKL LSAMDSLEAS DREKVALASQ LIDELSLPSQ EKQALMQRLK QAYPNGFAVK QGEVKQDAVK PEALQQEALK QETVKQSTVE QEASESSQQA LMDEPAALGI DPDKLDEEED KPSPYSLLEW AKGILNDLGL GFGWAAFYFT IFTAWFDGQT LGKKLLNIRV VPLDASSISL WDAFGRYGGY GAGFATGLLG FLQIYWDANR QAIQDKISET VVVDLSKPRE IPAEESSPEV YGGA
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