Gene Shew_2381 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_2381 
Symbol 
ID4921445 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp2786733 
End bp2787977 
Gene Length1245 bp 
Protein Length414 aa 
Translation table11 
GC content53% 
IMG OID640163971 
ProductRDD domain-containing protein 
Protein accessionYP_001094506 
Protein GI127513309 
COG category[S] Function unknown 
COG ID[COG1714] Predicted membrane protein/domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000210385 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCCGAGCA CAGCGCATCA ATCTGCGAGC CCTGATTCAG CTAAAAAATC TAAGACAAAA 
GCTCCAAACT CCAAAGATCG TAAGACCAAA GATCCTAAGA GCAAGGACCC TAAGACAATA
GTCACCCCCT TCGCCTTTCA TGTAGCGCCA GAGCTGCTCT ATACCCCGCT GGCCTCGCCA
CTCAAGCGTG GCCTAGCGAT GCTGATCGAT GGTTTGCTGA TTAGCGTATT AGCTGAGCAG
GCCGGCGCCC TGTTTATTCT CCTGGTCGGT TTAACCTTAG TGATTGAGCG TCGCAGCCAT
CAACTGGGCA AGGCTTTGAA GTGGGGCCTC TATCTTGCCA TGCTCTTGAT GACAATCTGG
GTCACCAGCG ACAACATCAT CTCCTACGGC GATGCGGATA AAGGTAAAGA CGGGGAGAAA
GTGGCGCAAA CTACGGGTCA GCAGGCGGAG TCGCTGAATG CACTTAAGGT CATGCCGCAG
ATAATAGCCC TTAGCCTGTG TGAGGAGGCA AGCTGCGCCG ACGAGAAATT AACTAAGCTG
CTTAGCGCGA TGGACAGCTT AGAGGCAAGC GACAGGGAGA AAGTGGCGCT GGCATCTCAG
CTGATCGACG AGCTGTCTCT GCCGAGTCAG GAAAAACAAG CACTGATGCA GCGCCTAAAG
CAGGCTTACC CTAATGGCTT TGCTGTAAAG CAAGGCGAGG TTAAGCAAGA CGCGGTGAAG
CCAGAAGCAC TGCAGCAAGA AGCACTGAAG CAAGAGACGG TGAAACAAAG CACGGTGGAG
CAAGAGGCAA GCGAGTCAAG CCAACAAGCC TTAATGGATG AGCCAGCAGC GCTCGGGATT
GACCCGGATA AACTTGATGA GGAGGAAGAT AAGCCTTCGC CCTACAGCCT GCTGGAATGG
GCCAAAGGCA TCTTAAACGA TCTCGGGCTC GGCTTTGGCT GGGCCGCCTT CTACTTCACT
ATCTTTACCG CCTGGTTCGA TGGTCAGACA CTGGGTAAGA AGCTGCTCAA CATTCGGGTG
GTGCCGCTGG ATGCCTCATC TATCTCGTTA TGGGATGCCT TTGGGCGATA TGGTGGTTAT
GGCGCCGGTT TCGCCACAGG TTTACTCGGA TTCCTACAGA TATATTGGGA TGCTAACCGT
CAGGCGATTC AAGATAAGAT CTCAGAAACT GTCGTTGTTG ATCTCTCTAA GCCAAGAGAA
ATCCCAGCAG AGGAGAGCTC CCCTGAGGTA TACGGTGGCG CCTGA
 
Protein sequence
MPSTAHQSAS PDSAKKSKTK APNSKDRKTK DPKSKDPKTI VTPFAFHVAP ELLYTPLASP 
LKRGLAMLID GLLISVLAEQ AGALFILLVG LTLVIERRSH QLGKALKWGL YLAMLLMTIW
VTSDNIISYG DADKGKDGEK VAQTTGQQAE SLNALKVMPQ IIALSLCEEA SCADEKLTKL
LSAMDSLEAS DREKVALASQ LIDELSLPSQ EKQALMQRLK QAYPNGFAVK QGEVKQDAVK
PEALQQEALK QETVKQSTVE QEASESSQQA LMDEPAALGI DPDKLDEEED KPSPYSLLEW
AKGILNDLGL GFGWAAFYFT IFTAWFDGQT LGKKLLNIRV VPLDASSISL WDAFGRYGGY
GAGFATGLLG FLQIYWDANR QAIQDKISET VVVDLSKPRE IPAEESSPEV YGGA