Gene Shew_2379 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_2379 
Symbol 
ID4921443 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp2782295 
End bp2785720 
Gene Length3426 bp 
Protein Length1141 aa 
Translation table11 
GC content58% 
IMG OID640163969 
Productchromosome segregation protein SMC 
Protein accessionYP_001094504 
Protein GI127513307 
COG category[D] Cell cycle control, cell division, chromosome partitioning 
COG ID[COG1196] Chromosome segregation ATPases 
TIGRFAM ID[TIGR02168] chromosome segregation protein SMC, common bacterial type 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.882333 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00000367062 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
ATGAGACTCA CACAGATAAA ACTTGCTGGA TTTAAGTCGT TTGTCGATGT CACTAAAATC 
CCTTTTAACC AACCGCTTAC GGCAATTATC GGCCCCAATG GCTGTGGCAA GTCCAATGTG
ATCGACGCGG TGCGCTGGGT GTTGGGCGAA AGTTCTGCCA AGCACCTGCG CGGCGACTCC
ATGGCTGACG TTATCTTTAA CGGCTCCTCG GCCAGACGCC CTGTCTCTGT GGCCAGTGTC
GAGCTCAGCT TCGACAATCA GCAGGGCCGT CTGGGCGGTC AGTACGCCAG CTATCAGGCG
ATCGCCGTAA AACGTCAGGT GAGCCGCGAC GGTGAATCCA GTTACTTCCT CAATGGCCAG
AAGTGTCGTC GTAAGGACAT TACCGATCTC TTCATGGGCA CGGGACTCGG TCCGCGCAGC
TACGCCATTA TCGAGCAGGG CACCATCTCA CGGCTTATCG AATCTAAGCC TCAGGAGCTG
AGGGTCTTCA TAGAAGAGGC CGCCGGCATC TCCCGTTACA AGGAGCGGCG ACGCGAAACG
GAAAACCGCA TCCGCCATAC CCGCGAGAAC CTCGAACGCT TAGGGGATAT CCGTCAGGAG
CTGGGCCGAC AGATAGACAA GCTCGCCGAG CAGGCCGAGG CTGCGCGTCA ATATCGGGCA
TTGAAACAGA CGGAGCGGGA TCAACATGCC CAGCTCGAGG TGGCCAAATA TCTGGAGCTG
AGCGCCCAGT CTGACAAGTT ATCCCAGGAG ATAGAGGCTA AGACGCTGAC CCAGAGCGAG
GGCGACGCTG GGCGAGAAGC CCTGTCGCGC AACTTGACCG AGATTAAACT CAAACTCGAT
GAGCTTGAGC GCCAGGAGCA GCAACAGGTC GAGGCCTTCT ATCTCAATGG CAATCAGATC
GCCAAGCTCG AACAGGAGGT CAAGCATCGT CAGCAGCAAG ATGCGCACCT CAAGCAGCGT
ATCAAACAGG ACGAAGAGAA GCTGGCGCTG CTAAAGGCTC AGGAGCAGGC GCTCATATTG
GCGCGCGGCG ATCTCGATGA ACGTCAGCAC GGTGCCAGGG AGGCTCATCA GGCGTTGCAG
CTGCAGCTCG AGCTACTCGA TGAGCAGCTT GGCGAGGTTG AGTTATCCCT GGAGCAGGCA
CAGGAAGCCG AGAGCCAAGC CAAGCAGGCG GTTAACCAAT GTCAGCTACG CCTGGAGCTC
ACCAAGGGGG AGCTCAAGCA TAAGCAGAGC GCCCTGGCTC AGGTAAAGTC GCAACATCAG
AGCGCGTCAC GCCAGCTTGA GCAGTTATCC CATCAGGATG AAACCGACAA TCTTGCGCTG
CAACATGCTC AGTGTGAACG GCTCGCCGAG CGGCTCGATG AGCTGAAGGG CGAGATAGAG
CTGGGGGCCG CCACTCAGTC TCAGCGACAG GAGCAGGCGC GCCAGACCCA GGCGCAGGTC
GAAGCCCTGT CGCAGTCCTT GGCCGAGGAG CGGGGACGCC TGGCGGTGGT CAAACGTATC
TTACCTCAGG AAGATGCGCT TCAGGGCCGC GCCCTCTGGC AGGCGATTCA GGTCACGCCT
GGCTGGGAAG CGGCGGTCGA CCTGTTGCTC GACGGTCTGC TCACCCAGAA GGTGAGTGAC
AAGCACAGCG GAATGGAAAC AGAGAATGAG AGCGGCTTTG AGTTAAGCAG ATCTCAGAAG
TGGACTGGCC TCAGCAGCGA GGTCAACCTG GCGCCCTGGC TGTCCAGACT CAATTGGGCC
GATAGCCTGA GTCAGGCTAA GGCCATGCTG GGGTCAATCG AAGATGACGA GCGCATAGTG
ACCGCCGATG GCTACATCGT CGGTAACGGC TTTGTGCTGC AAAAGGCCGA GCAGGGCCGC
CAGCTGGTAC AGCTCAAGGC CGAGCAGCAG GCGCTTGAGC TCAGCATAGC GGCCAGTGTC
GAGGCGATAG ATGAGCGCAG GGCGGTGCTT GCCGAGGTCA ATCAGGCCTT GGATGAGCAG
CGTGAGGCGC TCACCCAGCT TAATACCAGT TTGCAGGGGA CGCAGCTTGA GCGTGAACGC
CTGATGGCAC AGGCTCAGGC GACTCAGGAG CGTATCGCCC AGCAAGGGGA GCAGCAAGCC
AGGCTGAAGG CCTTGCTCGA AGAGCAGATC GGCGAGCTAG AAGCCGTGGA GCAAAGCCTA
AGTGAGCTGA CAAGTCGTCG CGATCAAGAC GAGGCGCAGC TGACTGAGCT GACGCGCTCA
GCCGACAGCC AGGTGGCAGG ACTTGCCGAT CGCCGCGCTC AGCATAAGGC GCTGGGCCGC
GAGCGTCAGG CGTTGGCGCT GCAGTCCCAG CAGCTACAGC AGTCGCTGCA GGCGATCAAT
ACCGAGCAGG CGCTTAGCCG TCAGCAGGGT GAGCAGCTCG AGCGGCAGAT GAAGGAGCTG
GCCCAAGAGC TGAGCGAGCT TCAAGGGCAA CTCGAGGGGC AGGATAAGCT AGATGGTAAG
CTGCAAGCCG ATGCCATGGC GGCCCAGCTC AATGATGCCT TGGCGCGTCA GGGGGAGGTG
CAGGCGGCGC TCGATGCATT GCGTCTGCAG CAGGCTGAGC TGCAAAATCA AGCAGACGAG
ATCGGCGCCA AACAAAAACA ACAACTTGGC AAGTTAGAGC ACTTGACTCA AGCCATCAGC
GCGTTAAAGT TACGTCGCGA AGGGATAAAA GGTCAAATTG ACAGTCAGTT AGCCCAGATC
AGGAGCCAGG AGGTGGATAT CGCCGAGGTG CAGGCAACGC TGGATCTGAC TGTGAGCCTG
AGTCATCGTC AGAAGACGCT TGAGCGCACA AAGGCGCAGA TCGAACATCT TGGCGCGATA
AATTTGGCGG CGATTGAAGA GTTCGAGCAG CAGAGTCAAC GCAAGGCCTA TCTCGACAGT
CAGGATGCGG ACTTGGCCAA GGCCCTCGGC AGCCTGGAGG AGGCGATCCG CAAGATCGAC
CGCGAGACCA AGACGCGCTT TAAGGAGACC TTCGATAAGG TCAACCAAGA TCTTGGTGTG
CTGTTTCCTA AGGTGTTCGG CGGCGGCAGT GCCTATCTGG CGCTGACCGA TGATGATCTG
CTGGAGACTG GCGTGACCAT CATGGCCAGA CCGCCGGGGA AAAAGAATAG TACGATTCAC
CTGCTTTCGG GTGGAGAAAA AGCATTAACC GCTTTATCAT TGGTATTTGC GATTTTCAGG
CTGAATCCGG CGCCTTTTTG TATGTTGGAT GAGGTCGATG CACCGCTCGA TGATGCCAAT
GTCGACAGGT TCTGCCGACT GGTAAAAGAG ATGTCTCAGA GCGTGCAATT TGTTTATATT
AGTCACAATA AGATCACCAT GGAATTGGCC GATCAACTAA TAGGTGTCAC TATGCACGAG
CCAGGGGTTT CACGCATAGT TGCCGTCGAT ATCGATGAGG CGGTGGCATT AGCCGACGCA
GTATAA
 
Protein sequence
MRLTQIKLAG FKSFVDVTKI PFNQPLTAII GPNGCGKSNV IDAVRWVLGE SSAKHLRGDS 
MADVIFNGSS ARRPVSVASV ELSFDNQQGR LGGQYASYQA IAVKRQVSRD GESSYFLNGQ
KCRRKDITDL FMGTGLGPRS YAIIEQGTIS RLIESKPQEL RVFIEEAAGI SRYKERRRET
ENRIRHTREN LERLGDIRQE LGRQIDKLAE QAEAARQYRA LKQTERDQHA QLEVAKYLEL
SAQSDKLSQE IEAKTLTQSE GDAGREALSR NLTEIKLKLD ELERQEQQQV EAFYLNGNQI
AKLEQEVKHR QQQDAHLKQR IKQDEEKLAL LKAQEQALIL ARGDLDERQH GAREAHQALQ
LQLELLDEQL GEVELSLEQA QEAESQAKQA VNQCQLRLEL TKGELKHKQS ALAQVKSQHQ
SASRQLEQLS HQDETDNLAL QHAQCERLAE RLDELKGEIE LGAATQSQRQ EQARQTQAQV
EALSQSLAEE RGRLAVVKRI LPQEDALQGR ALWQAIQVTP GWEAAVDLLL DGLLTQKVSD
KHSGMETENE SGFELSRSQK WTGLSSEVNL APWLSRLNWA DSLSQAKAML GSIEDDERIV
TADGYIVGNG FVLQKAEQGR QLVQLKAEQQ ALELSIAASV EAIDERRAVL AEVNQALDEQ
REALTQLNTS LQGTQLERER LMAQAQATQE RIAQQGEQQA RLKALLEEQI GELEAVEQSL
SELTSRRDQD EAQLTELTRS ADSQVAGLAD RRAQHKALGR ERQALALQSQ QLQQSLQAIN
TEQALSRQQG EQLERQMKEL AQELSELQGQ LEGQDKLDGK LQADAMAAQL NDALARQGEV
QAALDALRLQ QAELQNQADE IGAKQKQQLG KLEHLTQAIS ALKLRREGIK GQIDSQLAQI
RSQEVDIAEV QATLDLTVSL SHRQKTLERT KAQIEHLGAI NLAAIEEFEQ QSQRKAYLDS
QDADLAKALG SLEEAIRKID RETKTRFKET FDKVNQDLGV LFPKVFGGGS AYLALTDDDL
LETGVTIMAR PPGKKNSTIH LLSGGEKALT ALSLVFAIFR LNPAPFCMLD EVDAPLDDAN
VDRFCRLVKE MSQSVQFVYI SHNKITMELA DQLIGVTMHE PGVSRIVAVD IDEAVALADA
V