Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_2379 |
Symbol | |
ID | 4921443 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 2782295 |
End bp | 2785720 |
Gene Length | 3426 bp |
Protein Length | 1141 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 640163969 |
Product | chromosome segregation protein SMC |
Protein accession | YP_001094504 |
Protein GI | 127513307 |
COG category | [D] Cell cycle control, cell division, chromosome partitioning |
COG ID | [COG1196] Chromosome segregation ATPases |
TIGRFAM ID | [TIGR02168] chromosome segregation protein SMC, common bacterial type |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.882333 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 0 |
Fosmid unclonability p-value | 0.00000367062 |
Fosmid Hitchhiker | No |
Fosmid clonability | unclonable |
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Sequence |
Gene sequence | ATGAGACTCA CACAGATAAA ACTTGCTGGA TTTAAGTCGT TTGTCGATGT CACTAAAATC CCTTTTAACC AACCGCTTAC GGCAATTATC GGCCCCAATG GCTGTGGCAA GTCCAATGTG ATCGACGCGG TGCGCTGGGT GTTGGGCGAA AGTTCTGCCA AGCACCTGCG CGGCGACTCC ATGGCTGACG TTATCTTTAA CGGCTCCTCG GCCAGACGCC CTGTCTCTGT GGCCAGTGTC GAGCTCAGCT TCGACAATCA GCAGGGCCGT CTGGGCGGTC AGTACGCCAG CTATCAGGCG ATCGCCGTAA AACGTCAGGT GAGCCGCGAC GGTGAATCCA GTTACTTCCT CAATGGCCAG AAGTGTCGTC GTAAGGACAT TACCGATCTC TTCATGGGCA CGGGACTCGG TCCGCGCAGC TACGCCATTA TCGAGCAGGG CACCATCTCA CGGCTTATCG AATCTAAGCC TCAGGAGCTG AGGGTCTTCA TAGAAGAGGC CGCCGGCATC TCCCGTTACA AGGAGCGGCG ACGCGAAACG GAAAACCGCA TCCGCCATAC CCGCGAGAAC CTCGAACGCT TAGGGGATAT CCGTCAGGAG CTGGGCCGAC AGATAGACAA GCTCGCCGAG CAGGCCGAGG CTGCGCGTCA ATATCGGGCA TTGAAACAGA CGGAGCGGGA TCAACATGCC CAGCTCGAGG TGGCCAAATA TCTGGAGCTG AGCGCCCAGT CTGACAAGTT ATCCCAGGAG ATAGAGGCTA AGACGCTGAC CCAGAGCGAG GGCGACGCTG GGCGAGAAGC CCTGTCGCGC AACTTGACCG AGATTAAACT CAAACTCGAT GAGCTTGAGC GCCAGGAGCA GCAACAGGTC GAGGCCTTCT ATCTCAATGG CAATCAGATC GCCAAGCTCG AACAGGAGGT CAAGCATCGT CAGCAGCAAG ATGCGCACCT CAAGCAGCGT ATCAAACAGG ACGAAGAGAA GCTGGCGCTG CTAAAGGCTC AGGAGCAGGC GCTCATATTG GCGCGCGGCG ATCTCGATGA ACGTCAGCAC GGTGCCAGGG AGGCTCATCA GGCGTTGCAG CTGCAGCTCG AGCTACTCGA TGAGCAGCTT GGCGAGGTTG AGTTATCCCT GGAGCAGGCA CAGGAAGCCG AGAGCCAAGC CAAGCAGGCG GTTAACCAAT GTCAGCTACG CCTGGAGCTC ACCAAGGGGG AGCTCAAGCA TAAGCAGAGC GCCCTGGCTC AGGTAAAGTC GCAACATCAG AGCGCGTCAC GCCAGCTTGA GCAGTTATCC CATCAGGATG AAACCGACAA TCTTGCGCTG CAACATGCTC AGTGTGAACG GCTCGCCGAG CGGCTCGATG AGCTGAAGGG CGAGATAGAG CTGGGGGCCG CCACTCAGTC TCAGCGACAG GAGCAGGCGC GCCAGACCCA GGCGCAGGTC GAAGCCCTGT CGCAGTCCTT GGCCGAGGAG CGGGGACGCC TGGCGGTGGT CAAACGTATC TTACCTCAGG AAGATGCGCT TCAGGGCCGC GCCCTCTGGC AGGCGATTCA GGTCACGCCT GGCTGGGAAG CGGCGGTCGA CCTGTTGCTC GACGGTCTGC TCACCCAGAA GGTGAGTGAC AAGCACAGCG GAATGGAAAC AGAGAATGAG AGCGGCTTTG AGTTAAGCAG ATCTCAGAAG TGGACTGGCC TCAGCAGCGA GGTCAACCTG GCGCCCTGGC TGTCCAGACT CAATTGGGCC GATAGCCTGA GTCAGGCTAA GGCCATGCTG GGGTCAATCG AAGATGACGA GCGCATAGTG ACCGCCGATG GCTACATCGT CGGTAACGGC TTTGTGCTGC AAAAGGCCGA GCAGGGCCGC CAGCTGGTAC AGCTCAAGGC CGAGCAGCAG GCGCTTGAGC TCAGCATAGC GGCCAGTGTC GAGGCGATAG ATGAGCGCAG GGCGGTGCTT GCCGAGGTCA ATCAGGCCTT GGATGAGCAG CGTGAGGCGC TCACCCAGCT TAATACCAGT TTGCAGGGGA CGCAGCTTGA GCGTGAACGC CTGATGGCAC AGGCTCAGGC GACTCAGGAG CGTATCGCCC AGCAAGGGGA GCAGCAAGCC AGGCTGAAGG CCTTGCTCGA AGAGCAGATC GGCGAGCTAG AAGCCGTGGA GCAAAGCCTA AGTGAGCTGA CAAGTCGTCG CGATCAAGAC GAGGCGCAGC TGACTGAGCT GACGCGCTCA GCCGACAGCC AGGTGGCAGG ACTTGCCGAT CGCCGCGCTC AGCATAAGGC GCTGGGCCGC GAGCGTCAGG CGTTGGCGCT GCAGTCCCAG CAGCTACAGC AGTCGCTGCA GGCGATCAAT ACCGAGCAGG CGCTTAGCCG TCAGCAGGGT GAGCAGCTCG AGCGGCAGAT GAAGGAGCTG GCCCAAGAGC TGAGCGAGCT TCAAGGGCAA CTCGAGGGGC AGGATAAGCT AGATGGTAAG CTGCAAGCCG ATGCCATGGC GGCCCAGCTC AATGATGCCT TGGCGCGTCA GGGGGAGGTG CAGGCGGCGC TCGATGCATT GCGTCTGCAG CAGGCTGAGC TGCAAAATCA AGCAGACGAG ATCGGCGCCA AACAAAAACA ACAACTTGGC AAGTTAGAGC ACTTGACTCA AGCCATCAGC GCGTTAAAGT TACGTCGCGA AGGGATAAAA GGTCAAATTG ACAGTCAGTT AGCCCAGATC AGGAGCCAGG AGGTGGATAT CGCCGAGGTG CAGGCAACGC TGGATCTGAC TGTGAGCCTG AGTCATCGTC AGAAGACGCT TGAGCGCACA AAGGCGCAGA TCGAACATCT TGGCGCGATA AATTTGGCGG CGATTGAAGA GTTCGAGCAG CAGAGTCAAC GCAAGGCCTA TCTCGACAGT CAGGATGCGG ACTTGGCCAA GGCCCTCGGC AGCCTGGAGG AGGCGATCCG CAAGATCGAC CGCGAGACCA AGACGCGCTT TAAGGAGACC TTCGATAAGG TCAACCAAGA TCTTGGTGTG CTGTTTCCTA AGGTGTTCGG CGGCGGCAGT GCCTATCTGG CGCTGACCGA TGATGATCTG CTGGAGACTG GCGTGACCAT CATGGCCAGA CCGCCGGGGA AAAAGAATAG TACGATTCAC CTGCTTTCGG GTGGAGAAAA AGCATTAACC GCTTTATCAT TGGTATTTGC GATTTTCAGG CTGAATCCGG CGCCTTTTTG TATGTTGGAT GAGGTCGATG CACCGCTCGA TGATGCCAAT GTCGACAGGT TCTGCCGACT GGTAAAAGAG ATGTCTCAGA GCGTGCAATT TGTTTATATT AGTCACAATA AGATCACCAT GGAATTGGCC GATCAACTAA TAGGTGTCAC TATGCACGAG CCAGGGGTTT CACGCATAGT TGCCGTCGAT ATCGATGAGG CGGTGGCATT AGCCGACGCA GTATAA
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Protein sequence | MRLTQIKLAG FKSFVDVTKI PFNQPLTAII GPNGCGKSNV IDAVRWVLGE SSAKHLRGDS MADVIFNGSS ARRPVSVASV ELSFDNQQGR LGGQYASYQA IAVKRQVSRD GESSYFLNGQ KCRRKDITDL FMGTGLGPRS YAIIEQGTIS RLIESKPQEL RVFIEEAAGI SRYKERRRET ENRIRHTREN LERLGDIRQE LGRQIDKLAE QAEAARQYRA LKQTERDQHA QLEVAKYLEL SAQSDKLSQE IEAKTLTQSE GDAGREALSR NLTEIKLKLD ELERQEQQQV EAFYLNGNQI AKLEQEVKHR QQQDAHLKQR IKQDEEKLAL LKAQEQALIL ARGDLDERQH GAREAHQALQ LQLELLDEQL GEVELSLEQA QEAESQAKQA VNQCQLRLEL TKGELKHKQS ALAQVKSQHQ SASRQLEQLS HQDETDNLAL QHAQCERLAE RLDELKGEIE LGAATQSQRQ EQARQTQAQV EALSQSLAEE RGRLAVVKRI LPQEDALQGR ALWQAIQVTP GWEAAVDLLL DGLLTQKVSD KHSGMETENE SGFELSRSQK WTGLSSEVNL APWLSRLNWA DSLSQAKAML GSIEDDERIV TADGYIVGNG FVLQKAEQGR QLVQLKAEQQ ALELSIAASV EAIDERRAVL AEVNQALDEQ REALTQLNTS LQGTQLERER LMAQAQATQE RIAQQGEQQA RLKALLEEQI GELEAVEQSL SELTSRRDQD EAQLTELTRS ADSQVAGLAD RRAQHKALGR ERQALALQSQ QLQQSLQAIN TEQALSRQQG EQLERQMKEL AQELSELQGQ LEGQDKLDGK LQADAMAAQL NDALARQGEV QAALDALRLQ QAELQNQADE IGAKQKQQLG KLEHLTQAIS ALKLRREGIK GQIDSQLAQI RSQEVDIAEV QATLDLTVSL SHRQKTLERT KAQIEHLGAI NLAAIEEFEQ QSQRKAYLDS QDADLAKALG SLEEAIRKID RETKTRFKET FDKVNQDLGV LFPKVFGGGS AYLALTDDDL LETGVTIMAR PPGKKNSTIH LLSGGEKALT ALSLVFAIFR LNPAPFCMLD EVDAPLDDAN VDRFCRLVKE MSQSVQFVYI SHNKITMELA DQLIGVTMHE PGVSRIVAVD IDEAVALADA V
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