Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_2362 |
Symbol | |
ID | 4921734 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 2762994 |
End bp | 2763908 |
Gene Length | 915 bp |
Protein Length | 304 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 640163952 |
Product | dihydrodipicolinate synthase |
Protein accession | YP_001094487 |
Protein GI | 127513290 |
COG category | [E] Amino acid transport and metabolism [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0329] Dihydrodipicolinate synthase/N-acetylneuraminate lyase |
TIGRFAM ID | [TIGR00674] dihydrodipicolinate synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00000117821 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.484255 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAGTAA ACTGGCAAGG TGTATTCCCA GCAATTTCTA CCCAATTTAA TGACGATGGT TCGATCAACT ATGAGTCGAA CGCGAGAATG CTGGAAGACC TCATTCGTGA TGGTATCGAT GGGGTGATCG CCCTGGGTAC CATAGGCGAG AACGCCTCCC TTTCTCCGGA AGAAAAACGT GAATTCATCA AGCACACGGT CGAGACGGTC AATGGCCGTA TCCTGGTGCT CTCTGGCTGC ACCGAAAACA CGGCACAGCA GGCGGCGAAA TACGCCCAGG ATGTCGAGGC GCTCGGTGTC GATGGCCTGA TGCTACTGCC CGCCATGGTC TACCGCGGCA CTGACCGCGA GGTGATCGCC CACTACCAAC ACGTAGCGCG CTCGACCAAA CTGCCAATCA TGATCTACAA CAACCCTGTG GGTTATGGCG TCGACATCAA CCTGGAGATG ACCGCCGTTC TGGCCGAAGA GCCAAACATA GTGGCCATCA AGGAATCGAC CACAGATACT CGCCGCCTCA CCGAGTTGCA GAGCCGCTTT GGCGATCGTT TCAACATCCT CTGCGGTGTC GATGATATTG CGCTGGAGAG CATTTTGCTG GGTGCCACAG GTTGGATCTC TGGCCTAACC AATGTCTTCC CACGAGAATC TGTTACTCTG TTTAAACTGG CCCGTGCCGG CCGTATTGAA GAAGCCCGTG AGATCTACCG CTGGTTCATG CCGCTGCTGC GCCTGGACAC CATTCCGACC CTGGTACAGT GCATCAAGTT TGCCGAGCAG ATCGTCGGCC GCGGCAGCGA AAATGTACGC CTGCCTCGCA TGACCTTGAT CGGTGACGAG CGTGCCTATG TAGAAAAGGT GATGGCCGAA GCCTTGGCTA CCCGCCTGGA TCTCGACAAG TACAACCTCA ACTAA
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Protein sequence | MKVNWQGVFP AISTQFNDDG SINYESNARM LEDLIRDGID GVIALGTIGE NASLSPEEKR EFIKHTVETV NGRILVLSGC TENTAQQAAK YAQDVEALGV DGLMLLPAMV YRGTDREVIA HYQHVARSTK LPIMIYNNPV GYGVDINLEM TAVLAEEPNI VAIKESTTDT RRLTELQSRF GDRFNILCGV DDIALESILL GATGWISGLT NVFPRESVTL FKLARAGRIE EAREIYRWFM PLLRLDTIPT LVQCIKFAEQ IVGRGSENVR LPRMTLIGDE RAYVEKVMAE ALATRLDLDK YNLN
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