Gene Shew_2315 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_2315 
Symbol 
ID4922165 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp2711763 
End bp2712086 
Gene Length324 bp 
Protein Length107 aa 
Translation table11 
GC content52% 
IMG OID640163900 
Productiron-sulfur cluster assembly protein IscA 
Protein accessionYP_001094440 
Protein GI127513243 
COG category[S] Function unknown 
COG ID[COG0316] Uncharacterized conserved protein 
TIGRFAM ID[TIGR00049] Iron-sulfur cluster assembly accessory protein
[TIGR02011] iron-sulfur cluster assembly protein IscA 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.608398 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAATAA CGATGACACC GGCGGCGGCC GATCGAGTAA GAAGCTTCTT GGCCAACCGC 
GGTAAAGGTA TCGGATTACG TTTGGGACTG AAGACGTCCG GCTGCTCCGG CATGGCATAC
GTGCTGGAGT TTGTCGATGA ACTCAATGAC GACGATGAAG TTTATGAGAT CGATGGGGTG
AAAATCATCA TCGATGCCAA GAGCTTCATC TACCTGCAAG GGATCGAGTT AGATTTCGTC
AAAGAGGGAC TTAACGAGGG CTTCCAGTTC AACAACCCCA ATGCAAAAGG GGAGTGTGGC
TGCGGCGAGA GCTTCACCGT TTAG
 
Protein sequence
MAITMTPAAA DRVRSFLANR GKGIGLRLGL KTSGCSGMAY VLEFVDELND DDEVYEIDGV 
KIIIDAKSFI YLQGIELDFV KEGLNEGFQF NNPNAKGECG CGESFTV