| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2307 |
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| Symbol | |
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| ID | 4922157 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 2702822 |
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| End bp | 2705509 |
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| Gene Length | 2688 bp |
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| Protein Length | 895 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640163892 |
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| Product | hypothetical protein |
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| Protein accession | YP_001094432 |
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| Protein GI | 127513235 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3170] Tfp pilus assembly protein FimV |
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| TIGRFAM ID | [TIGR03504] FimV C-terminal domain
[TIGR03505] FimV N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00252843 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACTTTC GCACATCGCA TCTTGCTGGT TTGCTAGCCA GCGCTCTGCT TGTTCTCTCG
TCGACTTCGG GTCTTTTATC TGCCGCAGAA CCTCTCAATA TTACCGGCCC AGATGGCGAA
AGTCGCCAGA CTCTGCGTCA ATACGGGCCG ACCACGGCAT CCGATACCTT CTGGAGTATT
GCACAGAAAA CCCGTCCCGA TGCGAGTGTG ACCATCTATC AGGTGATGGC AGCGATTTAT
GAAGCCAATC CTCATGCGTT TACCAGCGAC AACTACAACA GCCTAGAGAA GGGGATGATC
CTGCTGATCC CATCTAAAGA GGTGATGCTG GCTATTCCTA AGAGCCTGGC CAAACAGCAG
GCAGAGAGTA ACGATAAAGG CTGGCGTCAG AAGCCGCAGA CGGCAGCAAA GCCTAAGCCG
GTAGTGACAC AGACTAAACA GGCTCAGGCG TCAGAAGCTA GTCAGCCAGA GATGGTTCAG
GCTGATAAGC CTAGCGCCGA GCAGCAGAAG CAGATCGAGG CGTTAACCGC CAAGCTCGAG
GCTGAGCAGG CCAAGAACCT GTCGCTCACC GACGAGCTGG CCAGGGCACA GGATAAGTTA
AACCTGGGCA ACAACGACAG CGAGATGCTG CAGGCTAAGA TAGACGAACA AAGCAGCCGC
ATCGCCGAGC TGGAAGAAGC GCTGCTGGTT CAAAAAGAGC AGAAGGCGCA GCTAAACAGT
GAGGTCGAGC AGCTTCGTCA GCAGCTGGCC GCCGCGACCC AACCGGCAAA GCCTAAAGAG
GTGGACGACA GCTGGCGCAC CATGATGGAT AACCCCCTCT ATCTCGGTCT GTTCGCTGCC
ATTCCGGCGC TATTGCTGCT GGTATTGGTA TGGTTATTCA TCAAGCGTCG CAACAACAAG
AGCGAAGCGG TAGAGTCGAG CACGCCCGTA ACGCCGCCGA TGGACGATAA GCCTGTCGCG
CCAGCGCCTG AAGATAGCGA AGAGATGATG GCTGTGCATC TGGATACAGA TGATGAGGCC
GATTCGCTGG ATTCCTTGAT GAAGGTCGAC GAGACCCAGT TAAAACCTGA GGCGGATCTG
AGTGACGAGC TGCCCCAAGA AGCTGCCGAG ATGGTAGTGG ATGCAGGTGA TGAGCAGGTG
ATGTCACCGG TTGAAGATGA AGGCCAATCA TTGGACGATC TCTGGGCCGA GGCCATGGGT
GAACAGGAGC AGGAAGAAGC TAAGGCAACC CAGGAAGATG ATCTCGACAG TCTGCTTGCC
GAACTAGACG CACCGCAAGA AGCGCCAATC GAAGAGACGC ATGTCGAAGA GAAGAGCATC
GAAGAGACTG CCTTCGAGGC GCCAGTTCTT GAGGAAGAGG CGACCCCAGA GACAGATCTC
GACGAACTGC TGGCCGAATT TGAGCAAGAA ACACCAAGCG AAGACGCCAA AGAGGAAGAC
TTGGATGCGC TGCTGGCGGA GTTTGACCTG CCGGCAGAAA CTGTGAACGA CGAGACTAAC
GTAGAAGAAG AGATTCGCGC AGAAGAGACT AGCTTAGAAG AGATTAAGCC AGAAGAAGCC
GCCGAGCCTG AAGCGTCCGA GGAAACCTTG GCCGATGAGA TCGCTCAGGA GCTTGAGGAG
GCGATCGAGG CCAAGGGCGA TGAGGGCGAT GTCGATGAGA CAGATCTCGA TGCCTTGCTG
GCAGGATTCG ATGCCGAGCC CGCTGCCCAA GCGTCCGATA GCGAGGATGA TGAGATTGCT
CGTCAGATCG CCGCCGAGCT TGAGGAAGAA AACGATGAGG TTGAAGAGGC GGATCTTGAT
GCCTTACTGG CCGAGTTCGA ACCTGCTGCG CCGGCAAGCG AGCCAGAAGC CGACGTCGCC
GATCTAGAGC TTGCCGAGGA TGAAGCTGAG GAGACTGCAC CTGAGGAGAC AGGGCCAGAA
CTTGACGTTG CAGCCGAGTT AGCCGCAGAG CAGGAAGAGA GCAAATCGGC CGGTCACGCG
CCGCTCGAGT TCGACCTGGG TGAAGATAAG CCGGCTGTAG AGGCGGACGC AGAGGAAGAG
ATTAAGGCCG AAGATGACGG CGAGGTGGAT CTCGACGCAC TGCTCGCCGA TCTCGAATCG
GTCGAAGAGG CGGAAGAGCC TAAGGTCGAA AAGGGCGAAT CGGGCTTCTT CGGTGATCTC
AAGGGGAACA AGCGTAGCAG CGATAACATG CTGGAGTGGG AATCAGCCTT GACCAGCGAC
GCGCCAAGCG CCCAAGAGAC GCCGGTTGAG GATGATGACG ATGGTATCTC GCTGCAGCTG
GACGATGATG ATAATCTGAC CGTAGATCAG GCCTTGGCTG CCCTTGATGC GGCGGAGAAG
AAGCGTCCCG CCAGAGCCGT GCCCGAGCAC GACCTGACCG CCTTCCAGCA AGACAACGGC
TTTATCGATA TCGACAGGCT GCTCAATGAG GCCGACGAGG AGCAGCTGGA TGTCGATAAG
TATAAGGAGC TGGATGTCGA CATGGGCGAG CTCGATAGCC TGATGGGCAA CGCCGCCATG
GTCGATGTGG ACGACGAAGA GAATGCGGTC AATGCCAAGC TGGATCTGGC CCGCGCCTAT
ATCGAGATCG ACGATATGGA CAGCGCCAAG GCGCTGCTTA AAGAGGTCGA GCTGGACGGC
AACGAGCGTC AGCAGCAGGA AGCCAAGAAG CTGCTAGACG AGCTCTAA
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| Protein sequence | MNFRTSHLAG LLASALLVLS STSGLLSAAE PLNITGPDGE SRQTLRQYGP TTASDTFWSI
AQKTRPDASV TIYQVMAAIY EANPHAFTSD NYNSLEKGMI LLIPSKEVML AIPKSLAKQQ
AESNDKGWRQ KPQTAAKPKP VVTQTKQAQA SEASQPEMVQ ADKPSAEQQK QIEALTAKLE
AEQAKNLSLT DELARAQDKL NLGNNDSEML QAKIDEQSSR IAELEEALLV QKEQKAQLNS
EVEQLRQQLA AATQPAKPKE VDDSWRTMMD NPLYLGLFAA IPALLLLVLV WLFIKRRNNK
SEAVESSTPV TPPMDDKPVA PAPEDSEEMM AVHLDTDDEA DSLDSLMKVD ETQLKPEADL
SDELPQEAAE MVVDAGDEQV MSPVEDEGQS LDDLWAEAMG EQEQEEAKAT QEDDLDSLLA
ELDAPQEAPI EETHVEEKSI EETAFEAPVL EEEATPETDL DELLAEFEQE TPSEDAKEED
LDALLAEFDL PAETVNDETN VEEEIRAEET SLEEIKPEEA AEPEASEETL ADEIAQELEE
AIEAKGDEGD VDETDLDALL AGFDAEPAAQ ASDSEDDEIA RQIAAELEEE NDEVEEADLD
ALLAEFEPAA PASEPEADVA DLELAEDEAE ETAPEETGPE LDVAAELAAE QEESKSAGHA
PLEFDLGEDK PAVEADAEEE IKAEDDGEVD LDALLADLES VEEAEEPKVE KGESGFFGDL
KGNKRSSDNM LEWESALTSD APSAQETPVE DDDDGISLQL DDDDNLTVDQ ALAALDAAEK
KRPARAVPEH DLTAFQQDNG FIDIDRLLNE ADEEQLDVDK YKELDVDMGE LDSLMGNAAM
VDVDDEENAV NAKLDLARAY IEIDDMDSAK ALLKEVELDG NERQQQEAKK LLDEL
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