| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2299 |
|---|
| Symbol | |
|---|
| ID | 4922292 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 2692559 |
|---|
| End bp | 2694571 |
|---|
| Gene Length | 2013 bp |
|---|
| Protein Length | 670 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640163884 |
|---|
| Product | DNA topoisomerase III |
|---|
| Protein accession | YP_001094424 |
|---|
| Protein GI | 127513227 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0550] Topoisomerase IA |
|---|
| TIGRFAM ID | [TIGR01056] DNA topoisomerase III, bacteria and conjugative plasmid |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCTTAT ACATAGCAGA GAAGCCCAGT CTCGGGCGGG CAATCGCCGA TGTGTTACCT
AAACCCCACA AGAAGGGCGA GGGCTATATC ACGGCGGCCA ATGGCGATAC CGTCTCCTGG
TGCATAGGCC ACCTGCTGGA GCAGGCCGAG CCCGACAGCT ATGATCCCGC CTTTAAGTCC
TGGTCGTTCG ACCATCTGCC CATAGTGCCG CAGCAGTGGA AGATGACCCC TAAGAGCAAG
ACTCGCGGTC AGCTCAGCGT GCTGAGAAAA TTGGTCAAGC AGGCCAGTCA GTTGGTGAAC
GCCGGGGATC CTGACCGTGA AGGTCAGCTG CTGGTGGATG AGGTGATCGC CTATCTGGGG
GTCAAGGGCG ATAAGCTAGA GCAGACCCAG CGTCTGCTGG TGAGCGACCT CAACCCTCAG
GCCGTTAAGC GTGCCCTGGG GCAGCTGCGT AGCAACCGCG AGTTTATCCC CCTGTCGACC
TCGGCGCTGG CGCGCTCCCG CGCCGACTGG CTCTATGGCA TGAACATGAC CCGCGCCTAT
ACGCTGCAGG GGCGCAAGGT GGGCTATCAG GGAGTGCTCT CTGTCGGTCG GGTGCAGACC
CCCCTGCTGG GCCTGGTGGT GCGCCGCGAT GAGGCTATTG AACATTTTGT CAGCAAGCCT
TTCTATGAGG TGCTGGCCAA TCTCTACACC CAGGAACAGG CGCATTTTAA GGCCAAGTGG
CAACCCAGCG AGGCCTGTCA GCCCTACATG GATGAGGAGG GGCGGGTGCT GTCGCGCCGC
CTGGCGGAAA ACGTGGTGGG GCGGATCACA GAGCAGCCCG CCAAGGTGAC AGATCTGCAG
GCCAAAGATA AGCAGCAGGG GCAACCCTTA CCCTATAACT TGTCGTCGCT GCAGATAGAT
GCGGCGAAGC GATTCGGCAT GAGTGCCAAG ACGGTGCTCG ATACCTGTCA GTCACTGTAT
GAGAAACATA AGCTGATCAC CTATCCGCGC TCCGATAGCC GTTATCTGCC CAAGGAGCAG
CTGGCCCTGG CGCCCAGCGT GATCGGCGCC GTGCTCAAGG GGGCTGGCGA ACTCACCGCC
CAGTGCGCCG CGCCGGATCT TAAGATAGTC TCCAAGGCCT GGAACGATGC CAAGGTGGAT
GCCCACCACG CCATAGTGCC CACCGAGAAG GTGGCCAACC TGAGTGCCCT GACTCAGGCC
GAGAAACAGA TCTACCTGCA ACTGGCCCGT CAATATCTGG CGCAGTTTTA CCCCGTCTAT
CGTTACCATG AGACTCAGGT TGAGGTGGAG ATCGCCGGCG GCCATTTTCA CACCAAGGCC
AAACAGGAGA TCGCCCTAGG CTGGAAGCAA CTGTTCCCTA AGCGCAGCGA TGACAAAACA
GACGGCGAGG GCGACGAGGC CCTGGCCCAG CTGCCGCCGC TACATAAGGG ACAGATGCTG
CACTCTGGCC AGGGAGAGCT TATCGAGAAG CAGACCCAGC CGCCCAAGGC CTTTACCGAT
GCCACCCTGC TGAGCGCCAT GACGGGGATC AGCCGCTACG TGACCAACCC AGAGATCCGT
AAGATCCTCA AGGAAACCGA CGGCTTGGGC ACAGAGGCGA CCCGCGCCGG GATCATAGAG
TTGCTGTTCA AGCGTGGTTT TCTGGCCCGC CAGGGGAAGT CTATCGTCTC GACCCCGGTC
GGTCGCGGCC TCATCAATAG CCTACCGGAG TCCGCTACCA CGCCTGATAT GACGGCGTTG
TGGGAGAGTC ACCTTGACGC CATCAGCCGT AAAGAGGCCA AGTACCTGAG CTTCATGGCG
CCGCTAGTCG AGTCGCTCAA TGGGCTTATC ATGCAGGCCG GTGCCCAGCT GCCCAAGGCC
TTGCAAGGTG TCGAGGCGCC TAAGCGTTCG TTTAAGAAAC GTGGCTATGG CAATCGACGC
GGCACGGCGA CAGGTGCCAA AGGCAAGGCT AGCGGGGCGA AAAAGACTGC GGCTAGAGCC
GCGTCTAAAA CAAGGGCTAA AACAAGCGCC TAA
|
|---|
| Protein sequence | MILYIAEKPS LGRAIADVLP KPHKKGEGYI TAANGDTVSW CIGHLLEQAE PDSYDPAFKS
WSFDHLPIVP QQWKMTPKSK TRGQLSVLRK LVKQASQLVN AGDPDREGQL LVDEVIAYLG
VKGDKLEQTQ RLLVSDLNPQ AVKRALGQLR SNREFIPLST SALARSRADW LYGMNMTRAY
TLQGRKVGYQ GVLSVGRVQT PLLGLVVRRD EAIEHFVSKP FYEVLANLYT QEQAHFKAKW
QPSEACQPYM DEEGRVLSRR LAENVVGRIT EQPAKVTDLQ AKDKQQGQPL PYNLSSLQID
AAKRFGMSAK TVLDTCQSLY EKHKLITYPR SDSRYLPKEQ LALAPSVIGA VLKGAGELTA
QCAAPDLKIV SKAWNDAKVD AHHAIVPTEK VANLSALTQA EKQIYLQLAR QYLAQFYPVY
RYHETQVEVE IAGGHFHTKA KQEIALGWKQ LFPKRSDDKT DGEGDEALAQ LPPLHKGQML
HSGQGELIEK QTQPPKAFTD ATLLSAMTGI SRYVTNPEIR KILKETDGLG TEATRAGIIE
LLFKRGFLAR QGKSIVSTPV GRGLINSLPE SATTPDMTAL WESHLDAISR KEAKYLSFMA
PLVESLNGLI MQAGAQLPKA LQGVEAPKRS FKKRGYGNRR GTATGAKGKA SGAKKTAARA
ASKTRAKTSA
|
|---|
| |