| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2217 |
|---|
| Symbol | |
|---|
| ID | 4923038 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 2587373 |
|---|
| End bp | 2588875 |
|---|
| Gene Length | 1503 bp |
|---|
| Protein Length | 500 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640163802 |
|---|
| Product | methyl-accepting chemotaxis sensory transducer |
|---|
| Protein accession | YP_001094342 |
|---|
| Protein GI | 127513145 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.802205 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.183546 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGAGAAG TAAAGTTTCG ATGGATAGAT CAGTATCTTA TCCATATGAC CCTGAAAACC
AAATTTACCA TTCTGGCCAT CATCCCCATC ATTACCCTCA TGGGGCTTTC CTATATCCTC
TATGGGCAGT TCAATAGCCA GATTAAGCAG AGTCACCAGC AGAGTGCCTT GGCTGACGCC
CAGAAGATGG TGGAGCTTAT CGACCTGAGC CTTAAGTACG TGCCAGACGA CAAGGCGGCG
AGCTTTAAGC AGGAACTGGT CAGTGCCGGC TTTGCCGATA CGCAATCGTC CCTCAACGCC
AAGACAAGCC GCCTGGTACA TGCCGGTGGT GGCACCTTAA TGCAAGGGGA CAGCCTGACA
GCCCATAGCC GCGCCTCAAG CGCTAACCTG GTTGCCAAGA CAGAAGTGAC AGATCTCGAC
CAGGTACTGA GCTCGGCTCA GAGCGTGGTC ATCATCAGCC TGGTGGCGCT TATCTTTGTT
ATCCTGCTAA GCAGCTACTA TATCTCCACC TTCGTCGGCG GCGCCCTCTA CACCAACGTG
ATGGCACTTA AACGCGCGGC CGATGGCGAT CTCACCGGAC GACTGAACTT CTTCGAGGTA
AAAGATGAGT TCAGCATCCT GGCGGTGAGC ATAGACACAC TCGTCGAACG TCAGCATCAG
CTGGTGAGCC GTATGACTCA GGCCAGCAGC CAGATCCGCA CCGTAGTGCA GGCCTTCAGA
CAGACGGCCC AAGAGGGACA AACTCTGGCC GCCGAGCAGC GTCAGCATCT GGATTCACTG
GCCACGGCAA TGGAGGAGAT GACCGCCGCG GTGAAAGAGG TGGCCCGCAA CGCCGAGCAA
TCTTCTAACG AGACCCAAGA GGCCAACCAA CAGGTTGAGG CGGGCTCGAA AGATATCGCC
ATCACGGTTC AAGCCATTGG CGATCTTGCC AACGAGATTG GCGACGCCTC GACGGCGGTG
AATACCCTGA ACGACAACGC CGCCAAGATC GACGAGGTGG TCACCACCAT CAACGCCATC
TCAGAGCAGA CCAACCTATT GGCGCTCAAC GCTGCCATCG AAGCGGCCCG CGCCGGTGAG
CAGGGTCGCG GCTTTGCCGT GGTCGCCGAT GAGGTCAGAA CCCTGGCCGG GCGCACCCAG
GCCGCCACGG TTGAGATCAA GTCGATGATC GAGGCATTGC AGACAGGCTC TCACGCACTC
ACCCAAGTGA TGAAACGCAC GGTCGAGAAG GCCCAGGACG GCAAGCAGCA TGTGCTGGAG
ACAGGTGAGG ATCTCAAGGC CATCGCCCAT CACAGCGAGC GGGTATACGA GATGAGCGTA
CTGATCGCCA CCTCGGCCGA GGAGCAATCG GCGGTCGCCA ACGAGATCGC CACCAACCTG
ATGGAGATCC GCAACCAGTC TCACGACGTG GAACAGTCTG CCAACCAGTC TGTCTCAGGC
TGCGACGAGC TGCACGCCAC CGCCGAACAG CTGGATCAGC TATTGGTTGG ACTGAAAGTC
TAG
|
|---|
| Protein sequence | MREVKFRWID QYLIHMTLKT KFTILAIIPI ITLMGLSYIL YGQFNSQIKQ SHQQSALADA
QKMVELIDLS LKYVPDDKAA SFKQELVSAG FADTQSSLNA KTSRLVHAGG GTLMQGDSLT
AHSRASSANL VAKTEVTDLD QVLSSAQSVV IISLVALIFV ILLSSYYIST FVGGALYTNV
MALKRAADGD LTGRLNFFEV KDEFSILAVS IDTLVERQHQ LVSRMTQASS QIRTVVQAFR
QTAQEGQTLA AEQRQHLDSL ATAMEEMTAA VKEVARNAEQ SSNETQEANQ QVEAGSKDIA
ITVQAIGDLA NEIGDASTAV NTLNDNAAKI DEVVTTINAI SEQTNLLALN AAIEAARAGE
QGRGFAVVAD EVRTLAGRTQ AATVEIKSMI EALQTGSHAL TQVMKRTVEK AQDGKQHVLE
TGEDLKAIAH HSERVYEMSV LIATSAEEQS AVANEIATNL MEIRNQSHDV EQSANQSVSG
CDELHATAEQ LDQLLVGLKV
|
|---|
| |