| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2193 |
|---|
| Symbol | |
|---|
| ID | 4923107 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 2551763 |
|---|
| End bp | 2552506 |
|---|
| Gene Length | 744 bp |
|---|
| Protein Length | 247 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640163778 |
|---|
| Product | peptidase M22, glycoprotease |
|---|
| Protein accession | YP_001094318 |
|---|
| Protein GI | 127513121 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1214] Inactive homolog of metal-dependent proteases, putative molecular chaperone |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00327839 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCCGGAAA ATAAAGATTT CTCAGCCCCA TTAAGTTTAC TCGCCCTGGA CACCTGCACC
GAGTTTTGTT CGGTCGCCCT GCAATATCAG GGACAGGTGT TTGCCCGTGA GGCCGATGCG
CCGCGGGAAC ACAGCCAACG CCTGCTACCC ATGGTGCAGG AAGTACTGCA AGAGGCGGGA
ATCGCGCTGA GTCAGGTGGA TGTGATCGCC TATGGCCGTG GGCCAGGCAG CTTCACCGGG
ATCCGCATCT GCACCTCTAT GACCCAGGGG CTGGCCTTAG GCCAAGATCT TCCCGTGGTA
GGGATCTCAA CCCTGGCGGC CATGGCCCAG GCGGCTATCG AGATAAAGGG CGCGACTCAA
GTAGCGACCG CCATCGATGC GCGCATGGGC GAGATCTACT ACGGCGAGTA CCTGTCTGTA
GATGGCTTGG CGAGCCTGGT CGGTGAAGAG CAAGTCTGCG CGCCCGAGCA GAAGCTGAGC
GAGCTGGGGG CCAATGCACA GGCTGTTAGC GGATTAGACT TTAGTGCGCC GATCGCTGCA
TGCGGCACAG GGTTTGATGC CTACCCGGCG CTGGTGACTG AGGCGATGAC TCTGGTCGAG
GAAGCCAAAT TCCCATTGGC GCGCCACATG CTGCCGCTGG CAGAAGCCGC GGTGAATGCG
GGGCAGGCGA CCGATGTGGA TCAGCTAAAG CCTGTGTATC TGCGTGATAC CGTGACCTGG
AAAAAACTGC CCGGTCGCGA GTAA
|
|---|
| Protein sequence | MPENKDFSAP LSLLALDTCT EFCSVALQYQ GQVFAREADA PREHSQRLLP MVQEVLQEAG
IALSQVDVIA YGRGPGSFTG IRICTSMTQG LALGQDLPVV GISTLAAMAQ AAIEIKGATQ
VATAIDARMG EIYYGEYLSV DGLASLVGEE QVCAPEQKLS ELGANAQAVS GLDFSAPIAA
CGTGFDAYPA LVTEAMTLVE EAKFPLARHM LPLAEAAVNA GQATDVDQLK PVYLRDTVTW
KKLPGRE
|
|---|
| |