| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2188 |
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| Symbol | |
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| ID | 4923287 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 2546738 |
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| End bp | 2548411 |
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| Gene Length | 1674 bp |
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| Protein Length | 557 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640163773 |
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| Product | long-chain-fatty-acid--CoA ligase |
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| Protein accession | YP_001094313 |
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| Protein GI | 127513116 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00109405 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.000240143 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGGAACAGC TTTGGACGAA AAATTTACCC CATGATGTGC CCGCTATTAT CGATGCAAAG
CAATACAGCT CGCTGATCGA CCTGTTTGAA AGCTCGGTAG CCAAGTATGC CGATCAGCCC
GCCTTTGTGA ACATGGGCGC GACGCTGACC TATCGAAAAC TCGAAGAGCG CAGCCGTGCC
TTTGCGGCTT ATCTGCAAAA CGAACTCAAG CTGCAGAAGG GCGATCGCGT GGCGATCATG
ATGCCTAACC TGCTGCAGTA CCCCATCGCC CTGTTTGGCA TATTGCGTGC CGGTATGGTG
GTGGTCAACG TGAACCCTCT GTATACCCCA AGAGAGTTGA AGCATCAGCT CAACGACTCG
GGTGCCAAGG CGATCGTCGT GGTATCTAAC TTTGCCAACA CCCTGGAGCA GGTGGTGGAG
CAGACGCCGG TGAAGAGCGT GATCCTCACA GGTCTTGGCG ACTTGCTCAG CGCGCCTAAG
CGCACCCTAG TGAACTTTGT AGTCAAGTAC ATCAAGAAGA TGGTGCCTAA GTATCATCTG
CCACATGCCA TCTCTATGCG TCAGTCGCTC TCTAAGGGAC GCCGCCTGCA GTATGTGAAG
CCGACTATCA AGGGGGACGA TATCGCCTTC TTGCAATACA CCGGCGGCAC CACAGGTGTA
TCTAAGGGCG CTATGTTGAC CCATGGCAAT ATCGTCAGCA ACCTGCTGCA GGCCGACGCG
GCCTATTCGC CGCTGCTCGC CGATGGTAAG GAGTTTGTGG TTACCGCACT GCCCCTGTAT
CACATCTTCG CCCTGACGGT GAACTGCCTC TTGTTCCTCC ATAAAGGCGC GAACAACCTG
CTGATCACTA ACCCAAGGGA TATCCCGGCA TTCGTGTCTG AGTTGAAGAA GCATCCATTC
ACGGCGCTCA CCGGGGTGAA CACCCTGTTT AATGCTCTGG TTAGCTCAGA AGAGTTTAAG
ACCTTGGATT TCTCCAACCT TAAGCTCTCT ATCGGTGGCG GTATGGCGGT GCAGCGCGCC
GTGGCCGATA AGTGGCAGGG GATCACCAAG ACGCGTCTAC TGGAAGGTTA CGGTCTGACC
GAGGCCTCGC CGCTGCTGAC CTGCTGCCCC TATAACCTGG AGGGCTACAA CGGCTCTATC
GGCTTCCCGG TTGCCAATAC CGACATGCAG GTGCGTGACG AGGAGGGCAA TGTGCTGCCT
CAGGGCGAGA CCGGCGAGCT GTTTGCCAAG GGCCCTCAGG TGATGAAAGG CTACTGGCAG
CGCCCCGAAG AGACGGCCAA GGTGATCGAT AAGGATGGCT ACCTGGCCAC CGGCGATATC
GGTTACATGG ATGAGCAAGG CTTCTTCTTT ATCGTGGATC GCAAGAAGGA TATGATCTTG
GTTTCTGGCT TTAACGTCTT CCCCAACGAG GTGGAAGAGG TGGTTGCCCT GCATCCTAAG
GTGCTGGAAG TCGCCGCCGT CGGCGTTCCC CATGAGGTGA GCGGCGAGCT GGTGAAGGTA
TTTGTGGTAC CAAAAGACAA ATCTTTGACC GAAGAGCAGG TGATCAAGCA CTGTCGTCAT
CATTTGACGG GATATAAAAT TCCTAAGCTG GTAGAATTCA GGGATGAGCT ACCTAAGAGC
AACGTGGGCA AGATCTTACG CCGCGAGTTG CGTGACGAAG CCAAATCGGC CTAG
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| Protein sequence | MEQLWTKNLP HDVPAIIDAK QYSSLIDLFE SSVAKYADQP AFVNMGATLT YRKLEERSRA
FAAYLQNELK LQKGDRVAIM MPNLLQYPIA LFGILRAGMV VVNVNPLYTP RELKHQLNDS
GAKAIVVVSN FANTLEQVVE QTPVKSVILT GLGDLLSAPK RTLVNFVVKY IKKMVPKYHL
PHAISMRQSL SKGRRLQYVK PTIKGDDIAF LQYTGGTTGV SKGAMLTHGN IVSNLLQADA
AYSPLLADGK EFVVTALPLY HIFALTVNCL LFLHKGANNL LITNPRDIPA FVSELKKHPF
TALTGVNTLF NALVSSEEFK TLDFSNLKLS IGGGMAVQRA VADKWQGITK TRLLEGYGLT
EASPLLTCCP YNLEGYNGSI GFPVANTDMQ VRDEEGNVLP QGETGELFAK GPQVMKGYWQ
RPEETAKVID KDGYLATGDI GYMDEQGFFF IVDRKKDMIL VSGFNVFPNE VEEVVALHPK
VLEVAAVGVP HEVSGELVKV FVVPKDKSLT EEQVIKHCRH HLTGYKIPKL VEFRDELPKS
NVGKILRREL RDEAKSA
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