| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2154 |
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| Symbol | |
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| ID | 4923326 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2498652 |
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| End bp | 2499812 |
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| Gene Length | 1161 bp |
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| Protein Length | 386 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640163739 |
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| Product | homogentisate 1,2-dioxygenase |
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| Protein accession | YP_001094279 |
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| Protein GI | 127513082 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3508] Homogentisate 1,2-dioxygenase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.634063 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCATTTT ATGTAAGACA GGGGGAGATC CCCCATAAAC GCCACATCAC CTTCAAGAAA
GAGAATGGTG AACTCTACCG GGAAGAACTC TTCTCCACCC ATGGCTTCTC CAATATCTAC
TCCAACAAGT ATCACCACAA CATGCCGACC AAGGCATTAG AGGTGAGCCC GTTCGAGGTC
AATCACGGCC AAACCTGGCA AGACACCTTG ATTCAGAACT ATAAGTTGGA CGCTAAGCTG
GCCGACCGCG AGGGTAACTT CTACTCGGCG CGCAACAAGA TCTTCTTTAA TAACGACGTG
GCCATGTACA GCGCCAAGGT CACCGAGGCG ACCGAAGAGT TTTACCGCAA CGCCTACGCC
GACGAGGTGA TCTTCGTCCA CGAGGGCCAG GGCAAGCTCT ACAGCGAATA TGGTGTGCTC
GATGTGAAAA AGTGGGACTA CCTGGTTATC CCGCGCGGCA CCACCTACCA GCTTAAGTTT
GACGATTACA GCCAGGTTCG CCTGTTTGTT ATCGAAGCCT TCTCCATGGT GGAGGTGCCT
AAGCATTTCA GAAACGAGTA CGGACAGCTT TTGGAGTCCG CTCCCTATTG TGAGCGCGAC
ATCCGAGTTC CTAGCCTGCA AGAAGCCGTG GTCGAGAAAG GCGCCTTCCC CTTGGTCTGT
AAATTTGGTG ACAAGTATCA GCTGACACAG CTTGAGTGGC ATCCCTTCGA TCTCGTGGGC
TGGGACGGCT GTGTCTACCC TTGGGCTTTC AACATTCAGG ATTACGCCCC TAAGGTAGGT
CAGATCCACC TGCCGCCGTC GGATCATCTG GTGTTTACCG CCCACAACTT CGTTATCTGT
AACTTTGTGC CGCGCCCGTA CGACTTCCAT CCCCAGTCTA TCCCGGCGCC TTACTACCAC
AACAATATCG ACAGCGACGA AGTGCTCTAC TATGTCGACG GCGACTTCAT GAGCCGCACC
GGCATCGAGG CCGGCTACAT GACCCTACAT CAGAAAGGGG TACCACACGG ACCACAACCT
GGCCGCACCG AGGCCTCGGT CGGCAAGAAA GAGACCTATG AATACGCAGT GATGGTCGAT
ACCTTCGCCC CACTGCAGCT AACCCAACAT GTACAAGGTT GCATGAGTAA AGACTACAAC
CGCTCTTGGT TAGAAGACTA A
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| Protein sequence | MPFYVRQGEI PHKRHITFKK ENGELYREEL FSTHGFSNIY SNKYHHNMPT KALEVSPFEV
NHGQTWQDTL IQNYKLDAKL ADREGNFYSA RNKIFFNNDV AMYSAKVTEA TEEFYRNAYA
DEVIFVHEGQ GKLYSEYGVL DVKKWDYLVI PRGTTYQLKF DDYSQVRLFV IEAFSMVEVP
KHFRNEYGQL LESAPYCERD IRVPSLQEAV VEKGAFPLVC KFGDKYQLTQ LEWHPFDLVG
WDGCVYPWAF NIQDYAPKVG QIHLPPSDHL VFTAHNFVIC NFVPRPYDFH PQSIPAPYYH
NNIDSDEVLY YVDGDFMSRT GIEAGYMTLH QKGVPHGPQP GRTEASVGKK ETYEYAVMVD
TFAPLQLTQH VQGCMSKDYN RSWLED
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