Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_2135 |
Symbol | ushA |
ID | 4923355 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 2481047 |
End bp | 2482750 |
Gene Length | 1704 bp |
Protein Length | 567 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640163720 |
Product | bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor |
Protein accession | YP_001094260 |
Protein GI | 127513063 |
COG category | [F] Nucleotide transport and metabolism |
COG ID | [COG0737] 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.000035246 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACAAATA AGCTTTTAAA AGGATTAGTC GCTACCGCTG TATTGGCAGC ACTTGCTGGT TGTAACAGCA GCGATGACGA CAAGGCGCCA ACAACATGTG CTGAAGCTGG CACTGCTTGC ACCAAATTTA CCGTACTGCA CACCAATGAT AACCATGGTC GTTTCTGGGA AAACAAAGAC GGCGAATATG GTATGGCGGC ACGTAAGACG CTGATCGAAA AGATCCGCGC CGAAGTGGCG GCCAATGGCG GCGAAACGCT GCTGCTTTCT GGTGGTGATA TCAACACAGG TGTACCTGAG TCTGATCTGC AAGACGCACT GCCAGATTTC CTTGGTATGA ACGATATCGG TTATGACGCT ATGGCGGTCG GTAACCACGA ATTTGATAAC CCATTGGCGG TACTGGATTC GCAGCGTTCT ATCGCTAACT TCCCAATGCT GGCGGCTAAC ATCTACAAAG AAGATGGCAC TCGCTACTTC GAAGCCTACA AGGTATTCGA TGTTAACGGC ATCAAGATTG CTGTTATCGG TCTAACCACC GAAGACACGG CTAAACTGGG TAACCCAGAA TTTATCTCAG GTCTTAAGTT CACCGATCCT AAAGAAGAGA TCGTTAAGGT GATCAAAGAG ATCAAAGACG CTAAGGCAGC CGATCTTATC TTCGCAACGA CTCACATGGG TCACTATGCG AACGGCGAAC ACGGCAGCAA CGCCCCTGGC GACGTGGCTC TGGCCAAGGC GCTTGAGCAA GGCCAACTTC AGGCTGTGAT CGGTGGTCAC TCACAAAACC CAGTTTGTAT GGAAGGCGGC GAGTATGCTG ACTTTGCACC GGGCGACGAG TGTACACCTG ATCAGCAAAA CGGTACCTAC ATCATGCAAG CTCACGAGTG GGGTAAGTAT GTTGGCCGTG CCGATTTCGA ATACTTCAAC GGTGAACTGC ACCTGGCTAA CTACAAGCTG GTTCCAGTTA ACCTAGTGAA GAAAGTAAAA GATGAACAAG GTAACGAGAC TAAAGTACTG GTAGGTGAAG CGATCGAGGC CGATGCTGCA CTGAAAGAGA TGCTTTCTTA CTACCAAGAG CGTGGTCAAG GCCAACTGGA TGAAGTGATA GCTTCTACCG ATGGCTTACT AGACGGTGAG CGTGCAAACG TACGTTACAT GCAGACTAAC CTGGGTCGTC TGATCGCCGA TGCACAGCGT ACCAAGGTTG CGGCCGATGT GGGCGTGATG AACTCTGGTG GTGTTCGTGC GTCAATCGAA GCCGGTGACA TCTCTTACCG CGACGTACTG ACAGTTCAGC CTTTCGGTAA CATGGTGACT CTAAGCACTA TGACAGGTGA AGAGCTTAGC GCTTACCTGG GTGAAGTGGC TAGCCTACAA ATTGGTGCAG GTGCTTACGC TCAGATCACT GGTGTTAAGA TGACGGTTGA CTGTGCGGCT AAGACAGTGG CTATCAGCGA AGTTAACGGT AAAGAGTACA GCGCGACTGG CTCTTACACC ATGACAGTAC CTAGCTACAA CGCGGCAGGT GGTGACGGCT ATCCTAAGCT AAACCCAGTA CAAACAGGTT ATGTTGACGC CGAAGTACTG TACACCTTCT TCAAGGATGC AGGCACTATC GTAGCGGCCG ACTACAACCC AGTAGGCGAT ATCGTTTACG AAAACTCTGA AAGTGTTGAA GGTTGTCAGA TCACTGCTCA ATAA
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Protein sequence | MTNKLLKGLV ATAVLAALAG CNSSDDDKAP TTCAEAGTAC TKFTVLHTND NHGRFWENKD GEYGMAARKT LIEKIRAEVA ANGGETLLLS GGDINTGVPE SDLQDALPDF LGMNDIGYDA MAVGNHEFDN PLAVLDSQRS IANFPMLAAN IYKEDGTRYF EAYKVFDVNG IKIAVIGLTT EDTAKLGNPE FISGLKFTDP KEEIVKVIKE IKDAKAADLI FATTHMGHYA NGEHGSNAPG DVALAKALEQ GQLQAVIGGH SQNPVCMEGG EYADFAPGDE CTPDQQNGTY IMQAHEWGKY VGRADFEYFN GELHLANYKL VPVNLVKKVK DEQGNETKVL VGEAIEADAA LKEMLSYYQE RGQGQLDEVI ASTDGLLDGE RANVRYMQTN LGRLIADAQR TKVAADVGVM NSGGVRASIE AGDISYRDVL TVQPFGNMVT LSTMTGEELS AYLGEVASLQ IGAGAYAQIT GVKMTVDCAA KTVAISEVNG KEYSATGSYT MTVPSYNAAG GDGYPKLNPV QTGYVDAEVL YTFFKDAGTI VAADYNPVGD IVYENSESVE GCQITAQ
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