Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_2130 |
Symbol | |
ID | 4923496 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 2472392 |
End bp | 2476063 |
Gene Length | 3672 bp |
Protein Length | 1223 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 640163715 |
Product | exodeoxyribonuclease V, beta subunit |
Protein accession | YP_001094255 |
Protein GI | 127513058 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
TIGRFAM ID | [TIGR00609] exodeoxyribonuclease V, beta subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGACAC AGACACTGGA TCCCCTAAGC CTGCCGCTGT CGGGCACTCG CCTCATCGAA GCCAGCGCAG GTACCGGCAA GACCTACACC ATCGCCGGCC TCTATGTGCG TTTATTATTG GGCGATAGCC AGCGCGCGCC GCTAAGCTGC GAGCAGATCC TGGTGGTAAC CTTTACAAAC GCCGCCACCC AGGAGCTTAG GGATCGTATC CGCAAGAAGA TCCAGCTGGC CTACCGCGCC TTTCTCGGCA TGGAGGTGGA CGATCCGCTA ATCAACACAC TCTATTCTGA GGCTGAGCCC GAGGCGCGCA GCCAGGCGCT GAAGCGGCTG GATCTCGCGC TCAAGTCGCT GGATGAGGCG GCGATTTTTA CCATACATGG TTTCTGCCAG CGCATTTTGT CGGACATGGC GTTCGAATCA TCCCTGCTGT TTGAGTCTGA ATTTACCCTG GATGATAGCG AATACCTGCA CCATGCGGTG CGCGACTTCT GGCGTGAGGC CTGCTATCCG CTGCCCGGCT ATCTGGCGCA GATCATCAGC AACAAGTTTA GCGATCCCGA CGGCCTGACC AAGCAGCTAA GGCCGCTTCT CGGCGCCAAT CAGGCCAGCG TCTCGCCGAC ACCCGAAGCC TTCAGTCAGG TGGCGGAGCG CCTGAGTCAG AGCCTTTCGA GACTCAGGCT CATCTGGCCG CGCGAGCGCG ATGCCACCCT TGAGCTGCTC AAGGCGCTGC CGCTCAACGG CACCCGCTTT GGCAAGAAAG ATCAGGGCTA TCCCAAGCTC GAGACCCTGT TCGCCGCCAT GGATAACTGG GCGGCTCAGC CGCTCTCCCT GCCCGACAAC AAGGTGCTGG GGGCGCTGGC ATTAGGCGGC CTCAAGCTCA ACAAGGGCGG CGAGAGCCCA ACGCCGGAAC AGGCGCCGCT ACTTGCCCAT ATCGAGCGCG TCACAGAGAC AATAGACACC CTAGTGCCCA GCTTCCTCTA TGGCGCCCGC GATGGAATAA AGGCCCGTTT TGCGGCGCAG AAACAGCTTA AGAATCTGCG CACACCGGAC GATCTGCTTA TCGCTCTGGC CGATGCCCTG AGCGAAGAAA CCGACCAGGA GCAGGCGCTG GCACGGGCCA TCGCCAAGCG TTTCCCCATC GCCCTTATCG ATGAGTTTCA GGACACAGAT CCGCTGCAAT ATCAGATCTT CAGCAGCATC TATCAAGGCC AGCAGGTCTC AACAGACAGC GACCTCGGGC TCTTGATGAT TGGTGACCCC AAACAGGCGA TCTACGCCTT TCGGGGCGCC GATATCCATA CCTATATCCA TGCCAGGGGC CAAACGGAAA ACCACTACAG CTTGGACACC AACTACCGCT CCAGCCAGGC CATGATCGAG GCGGTCAATC AGCTGTTCTC GAGGAGTGAC GATCCCTTTA TCAGCCAGGC GATCCCCTTT GAGTTAGTCA AGGCATCGCC CGAAGCGGCA GAGAAGCGCC TGGTCGAGAA GGTCCCCCAA ACGAGCGCGC TACGCCTTAA GCTACTCGGC GAAGATCCTA ACGCCGGGCT CAATAAGGCC AGCGCCCGCA GCCAGTTGGC CGAAGATGCC GCCAACGAGA TAGCCAGGCT ACTCAACGAG GCCCAGCGCG GCGAGTGCTT GAAGCAAGAT AAGCCGCTCA AGGCAAAAGA TATCGCCGTG CTTGTCAGGG ATCGCAACGA GGCCGCCTAT ATCAAAACGG CGCTGAGTAG CCGGGGGATA GGCGCCGTCT TTCTCAGCCG CGACAGCGTA TTCGATACCC TGGTGGCCAA GGAACTTGCC CTGGTACTGC TGGCCATCGC CAATCCCAAA GATGAGCGCG CGCTGCGAAG CGCCATGGCC ACCGCCCTGC TGGGCTATGA TGCCCAGGCG ATCCATGGCT TTAATCTGGA TGAAGATGTG CGTCAGCAGC AGCTTGAGGC CTTCGACAAC CTGCATCAAA CCTGGCTCAA GCGCGGGATC ATGCCCTGCA TGATGGCGTT GGCGGCCGAT ACCCGCCTCA TCGAGCGTCT GCTGACTGCA GATGAGGGGC AGCGCCGCCT GACCGATTTC AGGCACCTGG GCGAACTGCT GCAACAAAAA GCGATGGAGC TCGACGGCAT CAGCGCCCTG CTCAACTGGT ATCAGCAGAC GCTGATCGAG GTGAGTAGCA CGGAAGAGGC CCAGCTCAGG CTGGAGAGCG AGCAGAATCT GGTACAGATA GTCACCATAC ACAAGAGTAA GGGGCTGGAA TATCCCATCT GTTTCTTGCC CTTCGTCAGC CTGGCCAGAG ACAGTCGCCG CAAGCCTGCA CCTATGCTCT ACCACGAGCA AGATGCCCTG GTGTGGGATA TCGACCAGAG CGAGGAGGGC TGGGCCAAAT ACAAGGCAGA GAATCTCGCC GAAGATCTGC GCCTGCTCTA TGTGGCACTT ACCCGCCCCG TGCTCGCCTG CTACTGCTAT GTCGCCAACC ATTCGCGCTT CACCAAGCGT GACGGGATCA GCAGCCAATT ATTCGAGACT GCTATCGGCT ACCTGCTGGG CATAGAGACC AATGCCTGCG AGTTTGCCGA CATTCAGGCC GCCGCCCAGG CGCTGGCGAG CGAGGCGATC TCGGTCGACT TGGTGGAAAG CGATGCGCCC AAACTAGACT TTGACCCTAT CGACACTGCC GATGCCGTCA AGCTGGCGCC GCGGCCACTT AACCGCAGGC ACGAGATCCC CTGGCGGGTC GGCAGCTACT CAGGCCTGGT AAAACACTCG GCTCACGAAC AGATCAGCCC AGGCATGGGC GATGAGGCCT TTCCCGAGCT TGAGCAGTTA GCTCCCGATA GCGAGCAGCT GTCCAGGTTT AGCTTCGAGC GCGGCGCCAA CGCGGGAAGT TTCCTCCACT GGGTACTGGA GCAGATAGAC TTTACCTTGG CCGATACCAG CCTAGGCGAT GAGCTGCCCA AGGCGATGGA GCGCTTCGGT ATCGATAGCG AGTGGCAAGA TATGCTGCAT GCCTGGTATC TGGATCTGCT GCATACGCCC CTCGATGGTG ATGGGCTGCG TCTTGCGAGC CTCAGCCAGG CGCAAAAACT GGTGGAGATG GAGTTTTACA TGCCAATAGG CAAGCTCGAT GCACCTGGGC TCAATCAGCT GCTGAGTCAG TATGGTTATA GCGCCGCCCT GAACTTCGAG ACCCTAGAGG GGATGCTCAA GGGCTTTATC GACTTAACCT TCGAATATCA GGGCAAGTTC TATATCGCCG ACTACAAGTC CAATCATCTG GGGGATCACC TGAGTCACTA TGAAAAGCCC GCCATGCTGC GGGCCATCGC AGGTCACCAC TATGACCTGC AATACATCAT CTATAGCCTA GCGCTGCATC GCTACCTCAA GCTACGCCTG CCCGGCTACC AGTATGACCA GCATGTGGGC GGCTGCTACT ACCTCTTCCT TAGGGGCATG TCGGCCGACT CACCGAGTAC CGGCGTCTAC TACGACAAGC CGCCCCTGGC GCTGATCCAG GCCCTTGACA CCCTGCTTAG CGAGGCTGAG GCCAGTGAAT CTCAAGCTGA GTCAAAGGCA GAGTCTCAAG CTGAGCCTCA AGCTGAGCCT GAGTCGCACT CGCAAGCAGA CAGGCAATCT GACATGCCAT CAGGCCCAGC ACAAGGAGAG CTAGACCTAT GA
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Protein sequence | MATQTLDPLS LPLSGTRLIE ASAGTGKTYT IAGLYVRLLL GDSQRAPLSC EQILVVTFTN AATQELRDRI RKKIQLAYRA FLGMEVDDPL INTLYSEAEP EARSQALKRL DLALKSLDEA AIFTIHGFCQ RILSDMAFES SLLFESEFTL DDSEYLHHAV RDFWREACYP LPGYLAQIIS NKFSDPDGLT KQLRPLLGAN QASVSPTPEA FSQVAERLSQ SLSRLRLIWP RERDATLELL KALPLNGTRF GKKDQGYPKL ETLFAAMDNW AAQPLSLPDN KVLGALALGG LKLNKGGESP TPEQAPLLAH IERVTETIDT LVPSFLYGAR DGIKARFAAQ KQLKNLRTPD DLLIALADAL SEETDQEQAL ARAIAKRFPI ALIDEFQDTD PLQYQIFSSI YQGQQVSTDS DLGLLMIGDP KQAIYAFRGA DIHTYIHARG QTENHYSLDT NYRSSQAMIE AVNQLFSRSD DPFISQAIPF ELVKASPEAA EKRLVEKVPQ TSALRLKLLG EDPNAGLNKA SARSQLAEDA ANEIARLLNE AQRGECLKQD KPLKAKDIAV LVRDRNEAAY IKTALSSRGI GAVFLSRDSV FDTLVAKELA LVLLAIANPK DERALRSAMA TALLGYDAQA IHGFNLDEDV RQQQLEAFDN LHQTWLKRGI MPCMMALAAD TRLIERLLTA DEGQRRLTDF RHLGELLQQK AMELDGISAL LNWYQQTLIE VSSTEEAQLR LESEQNLVQI VTIHKSKGLE YPICFLPFVS LARDSRRKPA PMLYHEQDAL VWDIDQSEEG WAKYKAENLA EDLRLLYVAL TRPVLACYCY VANHSRFTKR DGISSQLFET AIGYLLGIET NACEFADIQA AAQALASEAI SVDLVESDAP KLDFDPIDTA DAVKLAPRPL NRRHEIPWRV GSYSGLVKHS AHEQISPGMG DEAFPELEQL APDSEQLSRF SFERGANAGS FLHWVLEQID FTLADTSLGD ELPKAMERFG IDSEWQDMLH AWYLDLLHTP LDGDGLRLAS LSQAQKLVEM EFYMPIGKLD APGLNQLLSQ YGYSAALNFE TLEGMLKGFI DLTFEYQGKF YIADYKSNHL GDHLSHYEKP AMLRAIAGHH YDLQYIIYSL ALHRYLKLRL PGYQYDQHVG GCYYLFLRGM SADSPSTGVY YDKPPLALIQ ALDTLLSEAE ASESQAESKA ESQAEPQAEP ESHSQADRQS DMPSGPAQGE LDL
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