| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2125 |
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| Symbol | |
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| ID | 4923491 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2462346 |
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| End bp | 2464283 |
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| Gene Length | 1938 bp |
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| Protein Length | 645 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640163710 |
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| Product | lytic transglycosylase, catalytic |
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| Protein accession | YP_001094250 |
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| Protein GI | 127513053 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCAAAGC GGTTAGGCAC ACTTTTTCAG GCAAAACGTT ATCTCCTCTT GGGCTTAGGG
GCGCTCATCC CCATGACGCT GTCGGCCGCC GGCTTAACCC CAACCCAGCA GCGCTACCTG
GATGCCAGAG AGGCACTGGA TAAGGGCCAA CTAGACAGCT ATCAGGCGCT GAGAAAACAG
CTCAATGGCT ATCCCCTCAC CCCATATCTC GACTACCACG CCGAGATAGA TAGCATTCTC
GACGCGCCGG GGGCTAAGGC ACTGGAATCT ATGGCGCGCT TCGATGGCAC ACCGCTCTAT
AACAGCGCCC GTCACCGCTA TCTGGAAAAT GCCGGTAAGC AAAAACATTG GCAGGATTTT
CTCGCCATGA GCCCTGAACT GCCCCGCAGC ATCAACTTGC AGTGCTATTA CTACCGCGCC
CAGCTAAGCC AGGGCGACAA GGCCGCAGCC TTCGACGGCG CCGAGAAGCT CTGGCTCCAC
GGTCATTCGC GCCCCAAGGA GTGCGACCCC CTGTTTAACG CCTGGGAAAA GGCTGGCAAT
CGAAGCCAAT CTCTGCTCTG GTCGCGCATG TTACTGGCCT TCAACGGTGG CGAGTATGGC
CTGCTCAAGT ATCTTGCCAG TAAGGTCACC GCCCACAAGA AAGAGGCCAA GCAACTCCTG
GCCGTCTATC AAGATCCCCG CAGCCTGAGA CACACCAAAC GCTTCAAGGT TAAGGCCACC
ATCTATGGCG ATATCGTCGA TGCAGGTCTC AGACGTCTGG CCCGAAAAGA TCTTGTTAAG
GCGGTCAGCC TGTTTACTAA GTATGAAAAG GCCCATCGCT TCAGCGACTA TCAGGGGCAG
AAACTGGCAC GCTACCTGAT GAAACGCGCC CTAGTTGCTC AGGAGACAGA GCTCAAAGCC
TTCGTCGACA GTCGCCTGCC CAAGACAGAC AGCGACGATC TTAAGGCGCT GCGCCTGCGC
TGGGCGATTC GAGAGGCGGA CAATCAGAGT CTGGACAACT ACCTGCCCCT GCTAAGCGAG
GCTAAGCGGC AGAAGGCCCG CTGGCAATAT TGGATAGCCA GGCGTCAGAT GGAGACAGGT
ACAGAGATGG CCGAGACCGC GCTGCCGAGC TTAAGTAAAC AACGCAACTT CTACGGCTTT
ACCGCGGCCG ACCTGATATC AACCTCAATA AACCTGGCGC AGATAGACAC ACAGCTCGAT
GAGAGTCTGA CGCCACAGCT AACCCAAGAC CCAGGCCTTG CCCGCGTCGA AGAGCTGTTG
GCGCTGGATA AAAAAATCGA TGCCCGCGCC GAATGGGTGT TGCTGCTTGG CCGCCATACA
CAGAACAAAC AGGCGCAGTA TGCCCTGCTG GCCCAACGCA ACCAGTGGCA CGATCTGACC
GTACAGGCCA GTATTCAGGG CCAGCTGTGG AACGACATGA CGCTGCGCTT TCCCTACGCC
GCCGACGAGG CCTTCAAGGC CGCCAGCAAG AGCGCCAAGG TTGATATCGA TGAGATCCGC
GCCATCGCCC GCAGGGAGTC CGCCTTCTAT CCCTACGCCA CATCAGGCGT GGGCGCCCGC
GGCTTGATGC AGCTGATGCC AGCTACGGCA AAAGAGACCG CCCGCAAGCA CGGCATGAAA
TACAGCGGCA GCAAGAGCCT CTACGATGTC TCCCTCAATA CTGCATTGGG AAGCCGTTAC
TACAAGTCGC TACTGGACAA GTTCGATGGC AATCGGGTGC TGGCTACTGC CGCCTATAAC
GCAGGACCCC ACAGGGTAAC CCGCTGGTTA GAGCAGAGCC AGGGCAAGTT GGATGTGTAT
GCCTTTATCG AGTCTATCCC CTTCACCGAG ACCCGCGAGT ATGTGCAGGC GGTATTAAGT
TATCGCGCCA TCTACCAGGC GAGACAGCAA AAGCCAGTCG CCCTCTTCTC CGCCGAGGAG
CTAGCGTTCA AGTATTAA
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| Protein sequence | MPKRLGTLFQ AKRYLLLGLG ALIPMTLSAA GLTPTQQRYL DAREALDKGQ LDSYQALRKQ
LNGYPLTPYL DYHAEIDSIL DAPGAKALES MARFDGTPLY NSARHRYLEN AGKQKHWQDF
LAMSPELPRS INLQCYYYRA QLSQGDKAAA FDGAEKLWLH GHSRPKECDP LFNAWEKAGN
RSQSLLWSRM LLAFNGGEYG LLKYLASKVT AHKKEAKQLL AVYQDPRSLR HTKRFKVKAT
IYGDIVDAGL RRLARKDLVK AVSLFTKYEK AHRFSDYQGQ KLARYLMKRA LVAQETELKA
FVDSRLPKTD SDDLKALRLR WAIREADNQS LDNYLPLLSE AKRQKARWQY WIARRQMETG
TEMAETALPS LSKQRNFYGF TAADLISTSI NLAQIDTQLD ESLTPQLTQD PGLARVEELL
ALDKKIDARA EWVLLLGRHT QNKQAQYALL AQRNQWHDLT VQASIQGQLW NDMTLRFPYA
ADEAFKAASK SAKVDIDEIR AIARRESAFY PYATSGVGAR GLMQLMPATA KETARKHGMK
YSGSKSLYDV SLNTALGSRY YKSLLDKFDG NRVLATAAYN AGPHRVTRWL EQSQGKLDVY
AFIESIPFTE TREYVQAVLS YRAIYQARQQ KPVALFSAEE LAFKY
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