| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2116 |
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| Symbol | |
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| ID | 4923600 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 2451758 |
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| End bp | 2453602 |
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| Gene Length | 1845 bp |
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| Protein Length | 614 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640163701 |
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| Product | AsmA family protein |
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| Protein accession | YP_001094241 |
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| Protein GI | 127513044 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2982] Uncharacterized protein involved in outer membrane biogenesis |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.738267 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATTTG TAAAATGGCT ACTCATAGTA TTTGCCTCCC TTTTCCTATT ATTGATCGCC
TATCTCACCC TTATCTTCGA TCCCAATGAC TTTAAGCCGC AAATTGTCGA GGCGGTGAAG
AAGCAAACTG GGCGCGATCT GGTCATTAAG CAAGATCTTA GCTGGACCTT CTTCCCCAGC
ATAGGCATCG CCCTTGGCGA CATCAGCCTG TCGAATCCTG AGGGGTTCAA ACATGACACC
ATGCTTAAGG TCGATGGCAT AGTGGCGGAG GTGGCACTGA TGCCACTGCT GAGTAAAGAG
GTAGAGATCG CCCAGCTGAA TTTAGATGGC CTGACCCTAA ACTTCGACAG CTACAAGAAT
GGCCGCAGCA GCATGGATGG TTTGACGTCC ACTGGCGAGA AGGCCGATAA GGCTGGCGAC
AAAACCGGTA GCGATGGGGC CGCTCAGGTC AGCGTGCAGC TGAGCAGCCT GAATATCGGT
GGCATCGCCA TCACCAACAC TCAGGTGAAT CTTTATGATG AGGCGACGGG TAAGACCCAG
GCACTGACAC TTGAATCCTT AACCTTAGGC GAGTTTTCTC TGGGGCAGTT TGCCGATCTT
GGTTACAAGT TCTCCATGAC TCAGCCTGAG ATGAAGGTCA GCAGCCAAGG TAAGGGGCAG
ATCAAGGTCG ATCCTAGTCT TGCGAAAATC GCCATCAAGG ATTTTGAGAT TGAGAACAGC
CTGGAAGGGG ATGCCATTCC CAATAAGCGC ATGAACATCA ATCTCACCAC TCAACTCGAG
CTGGATAACA ATGCCAAGAC CATGGCCTTG GTGCTCTCAA GTCTGAATGT CGAGCAGATT
AAGGCCCAGG GCAAAATGTC GGTTAATTAC GGCGCCAAGG TGCCAGATGT GGTGGCCTCT
ATGAGCTTTG GCGATGTCGA TGTGACGCCA TTTATGGCCA AAGATGATGG CACTAAGGGC
GAAGATAAGA CGGCTAAAGG CGAGGGCACG GCACCTGCCA AGGAGCCTGA CCTTAGCGGC
ATGAAGGCAG TTAACCTCAA GCTGGATCTC GATGCCAAGT CTGTGACTGC CGATAAGATC
AAGACAGAGA ACTGGTTGAT GAAGCTGACC CTGAAAAATG GTGTGCTAGA TGTCAGCCAG
CTAAGCGCCG AGCTCTATCA GGGTAAACTA CTTGCCAGCG CTCAGCTCGA TGGTCGTAAA
CCTGTTGCCA GCTACCGCTT CAACAAGAAG ATCTCCGGTA TTAAGGTGCG TCCTTTGCTG
ACCGATGCCG CCGAGGTCGA CATGCTGGCC GGTACCACCA ACTTCGAGGT GACAGGCAGT
GGCTACAGCC TGATCCCGGA TAACATCAAG CGTAATCTCG ATGCCAAGGG ACAGTTTGAG
ATCGCCGACG GTGCGCTTTA TGGGGTAAAC ATTCCGCAGA TGCTGCGTGA CGCCAAAGCA
AAACTCGGTG GTAACCTGAA TGCGGCCTCG AGCGGTGAGA AGAAAACCGA CTTCACTAGC
CTGACCGGCA GCTTTACCGT GGCCAAAGGG ATAGTGAACA ACCCGGATCT CAATATGGCA
TCACCACTTA TCCGTTTACA GGGTAAGGGC AATGTGAATC TGCTCTCCGA GGCGATCGAT
TATGCGCTGA AGACTTCAGT GGTCGGCTCG TTAGAGGGTC AGGGCGGCGC AGAGAAAGAT
GTGCTCTATG GCATCGAGAT CCCCTTTGCC ATCGCCGGCA CCATCAGCGA GCCTAAGTTC
TCCCTCGATA CCGCAGCCCT GTTCGATGCC AAGCTGAAAA AGGAAACCGA GAAGGCGACC
GACGAGCTAA AAGACAAGCT GTTTAAGAAG CTAGGCGGGC TGTAA
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| Protein sequence | MKFVKWLLIV FASLFLLLIA YLTLIFDPND FKPQIVEAVK KQTGRDLVIK QDLSWTFFPS
IGIALGDISL SNPEGFKHDT MLKVDGIVAE VALMPLLSKE VEIAQLNLDG LTLNFDSYKN
GRSSMDGLTS TGEKADKAGD KTGSDGAAQV SVQLSSLNIG GIAITNTQVN LYDEATGKTQ
ALTLESLTLG EFSLGQFADL GYKFSMTQPE MKVSSQGKGQ IKVDPSLAKI AIKDFEIENS
LEGDAIPNKR MNINLTTQLE LDNNAKTMAL VLSSLNVEQI KAQGKMSVNY GAKVPDVVAS
MSFGDVDVTP FMAKDDGTKG EDKTAKGEGT APAKEPDLSG MKAVNLKLDL DAKSVTADKI
KTENWLMKLT LKNGVLDVSQ LSAELYQGKL LASAQLDGRK PVASYRFNKK ISGIKVRPLL
TDAAEVDMLA GTTNFEVTGS GYSLIPDNIK RNLDAKGQFE IADGALYGVN IPQMLRDAKA
KLGGNLNAAS SGEKKTDFTS LTGSFTVAKG IVNNPDLNMA SPLIRLQGKG NVNLLSEAID
YALKTSVVGS LEGQGGAEKD VLYGIEIPFA IAGTISEPKF SLDTAALFDA KLKKETEKAT
DELKDKLFKK LGGL
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