| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2114 |
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| Symbol | |
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| ID | 4923598 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2449127 |
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| End bp | 2449909 |
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| Gene Length | 783 bp |
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| Protein Length | 260 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640163699 |
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| Product | hydroxyacylglutathione hydrolase |
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| Protein accession | YP_001094239 |
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| Protein GI | 127513042 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0491] Zn-dependent hydrolases, including glyoxylases |
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| TIGRFAM ID | [TIGR03413] hydroxyacylglutathione hydrolase |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.000176506 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCATACTG TTACCCCCAT CCCCGCCTTC AACGACAACT ATATCTGGCT GATTCATGCT
AAAGACAGCG GCGGTCATTA TGTGGTCGAT CCCGGTGATG CCAAGGCGGT GCTGGACTAT
CTCGAGCAAC ATCAAATTGT GCTCGATGGC ATCTTAATCA CCCACCACCA CAGCGATCAC
ACAGGTGGCA TCGCCGAGCT ACAGGCAAGC CATGACCATA AACTCACTGT CTACGGCCCA
GATAACGAAA ACATCAAAGG GATCAATCAT CCTATCTCGG GGCAAACTGA GTCTGTTAAG
CCAGAAAAAC TCGACAGTGA CGCCGCGGTT TTTCATCTTC CCGGCCACAC CTTGGGACAC
ATTGCCTACC TGATTGACGA TCATCTGTTC TGCGGCGATA CCCTGTTTAG CGCCGGCTGC
GGCCGCCTGT TTGAGGGCAC CCCAGCTCAG ATGCACCATT CCCTACAAAC CTTGGCGCAG
CTCGATGAAA CTACCCTCGT CTATCCCGCC CACGAATATA CTCAGGCAAA TCTGGCGTTT
GCTCTGACTG TCGAAAATGA CAATGAGGCC CTCATCGCCC ATGCCGCCAA GGTTAAACAG
CTTCGTGACC AAAATCTTCC GAGTCTGCCC TCCAGCATAG GTTTAGAGAA GCAGATCAAC
CCTTTCCTGC GCCCTGAGCA GGCAAGCATA AAACAGAATC TCAGTTGCCA TTTCGCCCAG
GATGTGACAG ATGACGGCAC CAGTTTCACG CTTCTACGTC AATGGAAGGA CAATTTCTTA
TAA
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| Protein sequence | MHTVTPIPAF NDNYIWLIHA KDSGGHYVVD PGDAKAVLDY LEQHQIVLDG ILITHHHSDH
TGGIAELQAS HDHKLTVYGP DNENIKGINH PISGQTESVK PEKLDSDAAV FHLPGHTLGH
IAYLIDDHLF CGDTLFSAGC GRLFEGTPAQ MHHSLQTLAQ LDETTLVYPA HEYTQANLAF
ALTVENDNEA LIAHAAKVKQ LRDQNLPSLP SSIGLEKQIN PFLRPEQASI KQNLSCHFAQ
DVTDDGTSFT LLRQWKDNFL
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