Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_2072 |
Symbol | |
ID | 4923436 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 2394292 |
End bp | 2394933 |
Gene Length | 642 bp |
Protein Length | 213 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 640163654 |
Product | endonuclease III |
Protein accession | YP_001094197 |
Protein GI | 127513000 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0177] Predicted EndoIII-related endonuclease |
TIGRFAM ID | [TIGR01083] endonuclease III |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATACCG AGAAGCGCCG CAAGATCCTG GAGATCTTTC GCGACAACAA CCCTAAGCCA GAAACCGAGC TTAACTTCTC CTCTCCCTTC GAGCTGCTGG TTGCCGTCAC CCTGTCGGCC CAGGCCACGG ACGTGAGCGT CAACAAGGCC ACCGACAAGT TATTTCCCGT CGCAAATACC GCCCAAGCCA TCTATGACCT AGGCGTCGAG GGGCTCAAAG ACTATATCAA GACCATAGGC CTGTATAACA ACAAGGCAAT CAACGTCATC AAGGCGTGCG AGATCTTGCT GGAGAAGCAC GGCGGCGAGG TGCCCGAAGA CAGAGAGGCG CTCGAAGCCC TGCCTGGCGT GGGTCGTAAG ACGGCCAACG TAGTATTAAA CACCGCCTTC GGCTGGCCGA CCATTGCCGT CGATACCCAT ATCTTTCGCG TCGCCAACCG CACCAAGTTT GCCATGGGCA AGAATGTGGA TCAGGTGGAG CAGAAGATGT TAAAGGTAGT ACCAGCCGAA TTTAAGGTAG ATGTGCACCA CTGGTTTATT CTTCACGGCC GTTATACCTG TGTCGCCCGT AAGCCGAGAT GCGGTAGCTG TTTAATAGAA GAGCACTGCG AGTTTAAAGA GAAGGTCTAT CCAGACGAAT AG
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Protein sequence | MNTEKRRKIL EIFRDNNPKP ETELNFSSPF ELLVAVTLSA QATDVSVNKA TDKLFPVANT AQAIYDLGVE GLKDYIKTIG LYNNKAINVI KACEILLEKH GGEVPEDREA LEALPGVGRK TANVVLNTAF GWPTIAVDTH IFRVANRTKF AMGKNVDQVE QKMLKVVPAE FKVDVHHWFI LHGRYTCVAR KPRCGSCLIE EHCEFKEKVY PDE
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