| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2067 |
|---|
| Symbol | |
|---|
| ID | 4923431 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 2388708 |
|---|
| End bp | 2389277 |
|---|
| Gene Length | 570 bp |
|---|
| Protein Length | 189 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 640163649 |
|---|
| Product | electron transport complex, RnfABCDGE type, B subunit |
|---|
| Protein accession | YP_001094192 |
|---|
| Protein GI | 127512995 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2878] Predicted NADH:ubiquinone oxidoreductase, subunit RnfB |
|---|
| TIGRFAM ID | [TIGR01944] electron transport complex, RnfABCDGE type, B subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0305749 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCAAG TTATTATTGC CATCATCCTA TTAGGATTAC TCGCCCTCGC CTTCGGGGCG
CTGCTGGGTT ACGCCGCCGA AAAATTTAAG GTCGAAGGCG ATCCCATTAT CGACCAGGCC
GAGGCACTGC TGCCGCAAAC CCAATGTGGC CAATGCGGCT ACCCAGGCTG TCGCCCCTAC
GCCGAGGCGA TCGCCAACGG CGAGAAGATC AACAAGTGTC CGCCGGGCGG CACCGCCACC
ATGGAGAAAC TTGCCGAGTT GATGGGCGTC GACCCAGAAC CGCTCACCGC CAACGCCGAG
ACCCAGGTGA AGAAGGTCGC CTTTATCCGC GAGGCTGAAT GTATCGGCTG CACTAAATGT
ATTCAGGCCT GTCCGGTCGA TGCCATCTTA GGCACAGGCA AGCAGATGCA CACGGTTATC
ACAGACTACT GCACAGGTTG CGATCTGTGT GTCGAGCCCT GCCCTGTAGA CTGTATCGAC
ATGATCCCAG TCGCCGAGAC ACTGCAAAAC TGGAGCTGGC AGCTCAATGC CATACCCGTG
GTCAATATTA GCGAGGAATC TAAGTGTTAA
|
|---|
| Protein sequence | MSQVIIAIIL LGLLALAFGA LLGYAAEKFK VEGDPIIDQA EALLPQTQCG QCGYPGCRPY
AEAIANGEKI NKCPPGGTAT MEKLAELMGV DPEPLTANAE TQVKKVAFIR EAECIGCTKC
IQACPVDAIL GTGKQMHTVI TDYCTGCDLC VEPCPVDCID MIPVAETLQN WSWQLNAIPV
VNISEESKC
|
|---|
| |