| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2052 |
|---|
| Symbol | |
|---|
| ID | 4923736 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 2370296 |
|---|
| End bp | 2370934 |
|---|
| Gene Length | 639 bp |
|---|
| Protein Length | 212 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 640163627 |
|---|
| Product | TetR family transcriptional regulator |
|---|
| Protein accession | YP_001094177 |
|---|
| Protein GI | 127512980 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1309] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.00634978 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.379689 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAATC GATCCGACAC GAAAACAAGA ATACTGGATG CGGCAGAAAA GCTATTCGCC
GAGCGCGGCT TTTCAGAAAC CTCCTTGCGG CTGATCACCA GCAAGGCAGA GGTTAACCTC
GCCTCGGTAA ACTATCATTT TGGCTCTAAG AAAGAGCTGA TCCGCGCCGT ACTCGCGCGC
TATCTGGACC GTTTCATGCC AGAAGCCTCA GATGCCGTGG TGCAATTAAA ACAGGCTAGC
GAACCTAGCC TGAATGAGAT CTTCTCGTCA TTGGTTAAAC CGCTCCTCGA GCTTAACAAG
TTTAAGGCCG ATGGCACCCG CACCTTTTTG CAACTGTTGG GCCGTGGCTA CATCGAGAGT
CAGGGGCACC TGAGATGGTT CATCACCACG CATTATGGTG AGCATCTGAG CGAGTTTGTG
AAGGCGGTTG CCGAAAGCGC GCCACATATT CCCCCCGCAG AGATGTTTTG GCGATTACAC
TTTACCTTAG GCACTGTGGT CTTCACCATG GCATCAGCTG ATGCCTTGAC CGAAATTGCC
GAGGCAGATT TCAATGAGCA CAATGATATC GAAGCCGTGA TCCGCAAGGT CATTCCATAT
CTGGCTGCCG GTGTGGCAGT GCCTGTGACA ACGCAGTAG
|
|---|
| Protein sequence | MANRSDTKTR ILDAAEKLFA ERGFSETSLR LITSKAEVNL ASVNYHFGSK KELIRAVLAR
YLDRFMPEAS DAVVQLKQAS EPSLNEIFSS LVKPLLELNK FKADGTRTFL QLLGRGYIES
QGHLRWFITT HYGEHLSEFV KAVAESAPHI PPAEMFWRLH FTLGTVVFTM ASADALTEIA
EADFNEHNDI EAVIRKVIPY LAAGVAVPVT TQ
|
|---|
| |