Gene Shew_1983 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_1983 
Symbol 
ID4921011 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp2295234 
End bp2296805 
Gene Length1572 bp 
Protein Length523 aa 
Translation table11 
GC content50% 
IMG OID640163552 
Productresponse regulator receiver modulated metal dependent phosphohydrolase 
Protein accessionYP_001094108 
Protein GI127512911 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG3437] Response regulator containing a CheY-like receiver domain and an HD-GYP domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00722808 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTAATTG ATATGGCGAA AAAGAGTCCA CTGTTCTCAG GTAAGAAGAA AGCAGCCGAA 
ACAGAAACAG GACCGGCCTG GCGCATACTG ATCGTCGACG ATGAGCCCGA TGTACACACA
GTAACAAAAC TCGCACTGTC GCGGTTTAAA CTAGATAACC GCGGCATAGA GTTTATTAAT
GCCTATAGCG GCGAAGAAGC AAAGCGGGTG TTACAAGATG AAAAAGACGT GGCCATGGCG
TTTATCGACG TGGTCATGGA GAGCGATCAC GCCGGTCTTG AGCTGGTCAA ATGGATCCGT
GAAGAGCATA ACGACCGCAG CATCAGATTA ATCCTGCGTA CCGGTCAGCC GGGACAAGCG
CCTGAAGAAG ATGTGATCGT CAATTACGAC ATCAACGATT ACAAGGCAAA GGCTGAATTG
GATTCACGTA AGCTGATCAC CAGCGTCTAC TCCGCGCTGA GAAGTTACCG CGATATCATG
GAGATCGAAG CGGCGAAACA AACGCAAATC CGCTACCGAG AGGGGCTAGA GCGTGTCGTC
AAGGCGACCT CTGGCCTGTT TGAACTCAGA ACTCTGTATC ATTTTGCCGA CGGTCTGCTG
ACTCAGGTCG CCAACCTCCT TAACCTCAAC AACGAGACCT TACTGCTGAC CTGCAATGCC
ATAGATGCGA TGAGCAAGGA TTTAAGTACC GACAAACTCC ATATCCTGGC TGGCACCGGC
CAATTTGCCA GTCACCATGA ACAAGCCATC CCCGAGCCCA TCGAGAAGCT GCTTAAACGG
GCACTACAGG AACAGACATG CCTGTATGAA GACAACCTAT TCGTCGGTTA CTTCCCAGCA
AAGAGTGGTT GGATCAATCT TTTGTATATG GACAACATAC ATGCCATTGG CGATCTGGAT
AAGAAGCTTA TCGATATCTT TGCCATCAAT GTCGGCGTCG CCTTCGAGAA CCTGCTGCTG
AACAAAGAGC TAGAAGATAC CCAGTCAGAA TTGATCTTCC GCCTAGGCGA TGTGGTCGAG
AGCCGCTCGA AGGAAGCCGC CAACCATGTG AAGCGTATGG CCGAGTACTG TTATATCCTG
GCAAAATTGG CCGGGCTCGA TGATCAACAG GCCGATCTCA TCAAACACGC ATCACCCATG
CATGACATAG GTAAGATAGC GACGCCGGAT GCCGTGTTAT TAAAACCTGG AAAACTAAAC
GATGAAGAGT GGCAGATCAT GCGTCAGCAT CCCGCCATCG GTCACCAGAT CTTGGGCAAC
TCAGAGCGCC CTATTCTCAA CGCTGCCGCC ATCATCGCCT TACAACACCA TGAGAAGTAC
GATGGCAGTG GTTATCCTGA TGGATTAAAA GGCGATGAAA TTCATATCTT TGCACGCATT
GTTGCTATCG CAGATGTGTT CGATGCGCTA TCCCACGAGC GCTGCTATAA ACCGGCCTGG
CCACTAGATG AAGTGATAGC CGAGATCGCA AAAGGTGCAG GGTCACACTT TGATCCTGAC
CTTACCTCAC TCTTTATCGA TAACATAGAA CACTTCAATA AGGTGCGATT AGCCCTAACT
GATAGCAATT AA
 
Protein sequence
MLIDMAKKSP LFSGKKKAAE TETGPAWRIL IVDDEPDVHT VTKLALSRFK LDNRGIEFIN 
AYSGEEAKRV LQDEKDVAMA FIDVVMESDH AGLELVKWIR EEHNDRSIRL ILRTGQPGQA
PEEDVIVNYD INDYKAKAEL DSRKLITSVY SALRSYRDIM EIEAAKQTQI RYREGLERVV
KATSGLFELR TLYHFADGLL TQVANLLNLN NETLLLTCNA IDAMSKDLST DKLHILAGTG
QFASHHEQAI PEPIEKLLKR ALQEQTCLYE DNLFVGYFPA KSGWINLLYM DNIHAIGDLD
KKLIDIFAIN VGVAFENLLL NKELEDTQSE LIFRLGDVVE SRSKEAANHV KRMAEYCYIL
AKLAGLDDQQ ADLIKHASPM HDIGKIATPD AVLLKPGKLN DEEWQIMRQH PAIGHQILGN
SERPILNAAA IIALQHHEKY DGSGYPDGLK GDEIHIFARI VAIADVFDAL SHERCYKPAW
PLDEVIAEIA KGAGSHFDPD LTSLFIDNIE HFNKVRLALT DSN