| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1957 |
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| Symbol | |
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| ID | 4920990 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2262067 |
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| End bp | 2263227 |
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| Gene Length | 1161 bp |
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| Protein Length | 386 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640163526 |
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| Product | tetratricopeptide repeat protein |
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| Protein accession | YP_001094082 |
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| Protein GI | 127512885 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2956] Predicted N-acetylglucosaminyl transferase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00000379744 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.0000558993 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTTAGAGA TTCTGTTTCT GTTGTTACCC ATTGCCGCCG GTTACGGTTG GTACATGGGT
CGCCGTAGTA TCAGGCATAA GCAGAATAGT AAACGTAAGC AGTTAAGCCG CGATTACTTT
ACCGGCCTTA ATTTCCTTCT GTCTAATGAA TCGGATAAGG CAGTCGATCT CTTTATCTCC
ATGCTGGACG TGGATGACGA CACCATTGAT ACCCATCTCT CCCTCGGCTC CTTGTTTCGC
AAGCGAGGCG AGGTAGACCG CTCGATTCGT ATTCACCAAA ACCTGATTGC CCGCCCAACT
CTGACAACCG AACAGCGTGA CATCGCCATG ATGGAGCTGG GCAAAGACTA TCTGGCCGCC
GGCTTCTACG ACAGAGCCGA GGAGATCTTC CTTAATCTGG TTCGCCAGGA AGATCACAGC
GAAGAGGCCG AAGATCAGCT GATCGCCATC TACCAGGTGA CCAAAGACTG GCAAAAAGCA
ATAGATATCA TCAAGAGCCT CAAGCGTAAG CGTCAGCAAT CGCTCAAACA CCTGCAGGCC
CATCTCTATT GTGAGCTTGC CGATGAGGCC AGCGACAGCG AGCTCAAGCT TAAACACCTG
GCACAGGCGA TAAAGCAAGA TCCCCAATGT GGCCGCGCCA TGTTAACCAG CGCCAAGCTG
TTCCTCGCTC AGCAGGAATT TGGCCGCGCC AAGGAGATGC TCTGCCGGTT GAAAGATGCC
GATATCGAAC TCTTTCCCGA GGCGCTCGCC ATCGCCAAAG AAGTTTATCA ATCGACCGAG
GATCTCGGCG CCTATCGTGA ACTGCTACGC GAAGCGTTAG AGCAGGGGGC TGGCGCGAGT
GTGGCCATCA CTCTGGCGCA GCAGATGATC ATTCAGGGAG AAACCCAAGA CGCCGAGAAG
TTGATTCTCG ATGGCCTCTA TCGCCATCCG ACCATGAAGA GTTTCCAGCA TCTGATGAAG
ATGCAGATCC AACACGCCGA AGATGGTCAG GCAAAACAGA GTTTGAACAT GCTCGCCGAA
CTAGTCGAGC AGCAGATAAA ATTCCGTCCC AGTTACCGCT GTATTGAGTG TGGTTTCCCG
TCCCACACCC TCTACTGGCA TTGCCCTTCC TGTAAGAGTT GGGGCACCAT CAAGCGGATC
CGCGGACTCG ACGGGGAGTA A
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| Protein sequence | MLEILFLLLP IAAGYGWYMG RRSIRHKQNS KRKQLSRDYF TGLNFLLSNE SDKAVDLFIS
MLDVDDDTID THLSLGSLFR KRGEVDRSIR IHQNLIARPT LTTEQRDIAM MELGKDYLAA
GFYDRAEEIF LNLVRQEDHS EEAEDQLIAI YQVTKDWQKA IDIIKSLKRK RQQSLKHLQA
HLYCELADEA SDSELKLKHL AQAIKQDPQC GRAMLTSAKL FLAQQEFGRA KEMLCRLKDA
DIELFPEALA IAKEVYQSTE DLGAYRELLR EALEQGAGAS VAITLAQQMI IQGETQDAEK
LILDGLYRHP TMKSFQHLMK MQIQHAEDGQ AKQSLNMLAE LVEQQIKFRP SYRCIECGFP
SHTLYWHCPS CKSWGTIKRI RGLDGE
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