| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1954 |
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| Symbol | rpsA |
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| ID | 4920987 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2259598 |
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| End bp | 2261265 |
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| Gene Length | 1668 bp |
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| Protein Length | 555 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640163523 |
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| Product | 30S ribosomal protein S1 |
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| Protein accession | YP_001094079 |
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| Protein GI | 127512882 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0539] Ribosomal protein S1 |
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| TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.00000214666 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.00000523034 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | ATGACTGAAT CTTTTGCTGA TCTATTTGAA CAATCCCTTC AACAACTTGA GTTCCGTCCA
GGTTCTATCG TTCGTGGTAC TGTAGTATCA ATCCAGAACG GTATGGTACT GGTTGACGCT
GGCCTTAAGT CTGAAAGCCC AATCCCAGCT GACCAATTCA AAAACGCACA AGGCGTTCTA
GAAATCGCTG TTGGTGATGA AGTTGACGTA GCCCTTGACT CTGTTGAAGA TGGTTTCGGT
GAAACTCAAC TTTCTCGTGA GAAAGCTAAG CGCCACGAAG CTTGGATCGT TCTAGAAAAA
GCTTACGAAG ATGCTGAAAC TGTAATCGGT GTCATCAATG GTAAGGTTAA AGGCGGTTTC
ACCGTTGAAC TAAACGGTAT CCGTGCATTC CTACCAGGTT CTCTAGTTGA CGTTCGCCCA
GTTCGCGACA CTGCTCACCT AGAAAACAAA GAACTAGAAT TCAAGGTTAT CAAGCTAGAC
CAGAAGCGTA ACAACGTTGT TGTTTCTCGT CGTGCTGTTA TCGAATCTGA AAGCAGTGCA
GAGCGTGATG CGCTACTTGA AAACCTACAA GAAGGTCAAG CAGTTAAGGG TATCGTTAAG
AACCTGACTG ACTACGGTGC ATTCGTTGAC CTAGGTGGCG TTGACGGTCT TCTACATATC
ACAGATATGG CTTGGAAGCG CGTTAAGCAC CCATCTGAAA TCGTAAACGT TGGTGACGAA
ATCAACGTTA AAGTACTTAA GTACGATCGT GAGCGCACTC GTGTTTCACT AGGTCTTAAG
CAACTTGGCG AAGACCCATG GTTAGAAATC AGCAAGCGCT ACCCAGAAAA CACTAAGTTG
ACTGGTCGCG TAACTAACCT AACTGACTAC GGCTGCTTCG TTGAAATCGA AGAAGGCGTT
GAAGGTCTGG TACACGTTTC TGAAATGGAT TGGACTAACA AGAACATCCA CCCATCTAAG
GTTGTTAACC TAGGTGATGA AGTTGAAGTT CTAGTTCTGG ACATCGATGA AGAGCGTCGT
CGTATTTCTC TAGGTCTGAA GCAATGTAAG ACTAACCCAT GGGATGATTT CGCAGAGCGT
TACGCGAAAG GCGACAAGGT TACTGGTAAG ATCAAGTCTA TCACTGACTT CGGTATCTTC
ATCGGTCTAG ACGGCGGCAT CGACGGTCTG GTTCACCTGT CTGACATCTC TTGGAACGGT
ACTGGCGAAG AAGCTGTATC TGACTACAAG AAAGGCGACG AAATCAGCGC AGTTGTACTG
TCAGTTGACC CAGAGCGTGA GCGTATCAGC CTAGGTGTTA AGCAGACTGA AGACGATCCA
TTCAACGCTT ATCTTGCAGA TAAGAAGAAA GGTGCTATCG TAACTGGTAC TGTTACTGCA
GTAGACGCGA AAGGCGTTAC TATCGAGTTG GCTGAAACTG TAGAAGGTTA CCTACGTGTT
TCTGACATCT CTCGTGAGCG CATCGAAGAT GCATCTACTG TATACTCAGT AGGTGACACT
GTTGAATCTA AGTTCATGGG TGTTGATCGC AAGAACCGTT CTATCAGCCT GTCTATCCGC
GCGAAAGACG AAGCTGATGA GAAGGAAGCG ATGGCTAACT TGAACAAGCA AGATGACGTT
GCTATGAGCA ATGCCATGGC TGAAGCGTTC AAAGCGGCTC GCAAATAA
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| Protein sequence | MTESFADLFE QSLQQLEFRP GSIVRGTVVS IQNGMVLVDA GLKSESPIPA DQFKNAQGVL
EIAVGDEVDV ALDSVEDGFG ETQLSREKAK RHEAWIVLEK AYEDAETVIG VINGKVKGGF
TVELNGIRAF LPGSLVDVRP VRDTAHLENK ELEFKVIKLD QKRNNVVVSR RAVIESESSA
ERDALLENLQ EGQAVKGIVK NLTDYGAFVD LGGVDGLLHI TDMAWKRVKH PSEIVNVGDE
INVKVLKYDR ERTRVSLGLK QLGEDPWLEI SKRYPENTKL TGRVTNLTDY GCFVEIEEGV
EGLVHVSEMD WTNKNIHPSK VVNLGDEVEV LVLDIDEERR RISLGLKQCK TNPWDDFAER
YAKGDKVTGK IKSITDFGIF IGLDGGIDGL VHLSDISWNG TGEEAVSDYK KGDEISAVVL
SVDPERERIS LGVKQTEDDP FNAYLADKKK GAIVTGTVTA VDAKGVTIEL AETVEGYLRV
SDISRERIED ASTVYSVGDT VESKFMGVDR KNRSISLSIR AKDEADEKEA MANLNKQDDV
AMSNAMAEAF KAARK
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