Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_1945 |
Symbol | nrdB |
ID | 4921479 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 2246079 |
End bp | 2247209 |
Gene Length | 1131 bp |
Protein Length | 376 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 640163514 |
Product | ribonucleotide-diphosphate reductase subunit beta |
Protein accession | YP_001094070 |
Protein GI | 127512873 |
COG category | [F] Nucleotide transport and metabolism |
COG ID | [COG0208] Ribonucleotide reductase, beta subunit |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.400272 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.0151301 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCTATT CAACATTTTG TCAAACACCT AACAATGCCC TGCTGGAACC TATGTTCCTC GGCCAATCGG TTAACGTTGC CCGTTACGAT ATTCAAAAAT ATGAAGTGTT CGAGAAACTG ATCGAGAAAC AACTCTCTTT CTTCTGGCGT CCAGAAGAAG TTGACGTCAG CAAAGACAAG ATCGATTACG CTGCGCTGCC AGATCACGAG AAGCATATCT TCATCTCTAA CCTCAAGTAC CAGACCCTGC TGGACTCGAT TCAGGGGCGC TCGCCAAACG TTGCCTTCCT GCCGCTGGTG TCGCTGCCGG AACTTGAGAC CTGGATCGAG ACCTGGTCTT TCTCTGAGAC GATTCACTCA CGCTCTTACA CCCACATCAT TCGTAATATC GTTAACGATC CTTCAGTGGT GTTTGACGAC ATCGTGCAGA ACGAAGAGAT CCTCAAGCGC GCCAGCGATA TCGCCGATTA CTACGATAAC CTGATCGAGC TGAGCCAGAT CTATCACCTG ATGGGTGAAG GCACCCACGA GATCAACGGC AAGACTGTAG AGGTCACCAC CCGTGCGATC AAGAAAGCCC TCTACCTGTG TATGATGTCG GTTAACGTGC TCGAAGCGAT CCGTTTCTAC GTCAGCTTCG CCTGCTCATT TGCCTTCGCC GAGCGCAAGC TGATGGAAGG TAATGCTAAG ATCATCCGCC TCATCGCCCG TGATGAAGCC CTGCACCTTA ATAGCACACA GCATATCCTT AAGCTGATGC AAGGTGGCAA GGACGACCCA GAGATGGCCG AGATCGCCAA AGAGTGCGAA CAGACGGCGA TCGACATCTT CGTTAAGGCG GCAGAGCAAG AGAAAGAGTG GGCCAAGTAC CTGTTCAAAG ACGGCTCTAT GATCGGCCTG AACGAGCAGA TCCTCTGCCA GTATGTCGAG TACATCACCA ACGAGCGTAT GAAGTCGGTT AACCTGGTAA GCCCTTATGC CGACCAGAGT AACCCGCTGC CGTGGATGAA GAACTGGCTG GAGAGTGATT CGGTACAGGT TGCGCCGCAG GAAGTTGAGG TGTCTTCTTA CCTGGTTGGT CAAATTGACG CGTCTGTCGA TGAGAGTGAG TTTGCCGACT TTGATCTCTA A
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Protein sequence | MAYSTFCQTP NNALLEPMFL GQSVNVARYD IQKYEVFEKL IEKQLSFFWR PEEVDVSKDK IDYAALPDHE KHIFISNLKY QTLLDSIQGR SPNVAFLPLV SLPELETWIE TWSFSETIHS RSYTHIIRNI VNDPSVVFDD IVQNEEILKR ASDIADYYDN LIELSQIYHL MGEGTHEING KTVEVTTRAI KKALYLCMMS VNVLEAIRFY VSFACSFAFA ERKLMEGNAK IIRLIARDEA LHLNSTQHIL KLMQGGKDDP EMAEIAKECE QTAIDIFVKA AEQEKEWAKY LFKDGSMIGL NEQILCQYVE YITNERMKSV NLVSPYADQS NPLPWMKNWL ESDSVQVAPQ EVEVSSYLVG QIDASVDESE FADFDL
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