| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1942 |
|---|
| Symbol | |
|---|
| ID | 4921476 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 2242810 |
|---|
| End bp | 2244825 |
|---|
| Gene Length | 2016 bp |
|---|
| Protein Length | 671 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 640163511 |
|---|
| Product | NADH:flavin oxidoreductase/NADH oxidase |
|---|
| Protein accession | YP_001094067 |
|---|
| Protein GI | 127512870 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1902] NADH:flavin oxidoreductases, Old Yellow Enzyme family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.0000878087 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.0169877 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGTTTC CGCATTTATT AGAACCCTTA GATCTCGGCT TCACACAATT GAAGAATCGT
GTGCTCATGG GCTCCATGCA CACCGGGCTC GAAGAAGAAA AGGGCGGTTT TGAGAAACTG
GCAAAATTCT ACCAAGAACG TGCTGCCGGT GGTGTTGGTC TGATTGTGAC CGGTGGGATC
TCGCCTAACC TCAGAGGTCG GTTGGCACCT AATGCTTGTC AGCTAAGCTT TCCCTGGCAG
GTCGCCAAGC ATAAGGTCGT CACCAGTGCG GTGCATGAGG CGGGCGGTAA GATCTGTATG
CAGATCCTGC ACGCCGGACG TTACGGCTAT CATCCTTTTT CACAGGCGCC CAGCAAAATT
AAGTCGCCTA TTACGCCGTT TACCCCCTCG GCCATGTCGG CCCGTCAGGT AAGAAGCACC
ATCAAAGATT ACGCCACCAC GGCGGCGCTG GCCAAGAAGG CGGGCTACGA TGGCGTGGAG
GTAATGGGAT CTGAAGGCTA CCTAATCAAT CAGTTTATTT GCGCCAGAAC CAATAAGCGC
AACGACGAGT GGGGCGGTGA GTTCAGCCAA AGAGCCAAGT TCCCGGTGGA GATCGTCAAG
GCGATTCGTG AAAGGGTCGG CAGCGATTTC ATCATAGTGT TTCGCCTCTC TATGCTTGAT
CTGGTGGATA ACGGCTCCTC CTGGGAGGAG GTGGTGCAGC TGGCCAAGTG GCTGGAGAGC
GCCGGCGTGA CCATCATCAA CACAGGCATA GGCTGGCATG AGGCCAGGGT ACCTACCATT
GCGACTAGTG TACCCCGCGG CGCCTTTGCC TGGGTGACTG AGCGCCTCAA GCAAGAGGTG
AGCGTCCCCC TTATCGCCAC TAACCGTATC AATACCCCTG AAATCGGCGA GCAGATCATT
TCCTCGGGTC AGGCGGATAT GGTCTCTATG GCCCGTCCTT TCCTGGCCGA TGCCGAGTTC
GTCAACAAAG CGGCAGCGGG TGAGAGTCAG CTGATCAACA CTTGCATCGG TTGTAATCAG
GCCTGTCTGG ATCATACCTT CGCGCTGAAA CGCGCCACCT GTCTGGTCAA CCCCAGAGCC
TGTTACGAGA CAGAGCTGAA TTTTGTGCCG GCGACTAGTA AGAAACGCAT CGCCGTCATG
GGAGCCGGCC CAGCAGGAAT GGCATTTTCC ATCTATGCCG CCAGCCGAGG CCATCAGGTG
GTGCTGTTTG AGGCCAAGGA TGAGGTCGGT GGTCAGTTTA ACCTGGCCCG AAAGATCCCC
GGTAAAGAGG AATTTGATGA GACCATCCGC TATTTCACCG AGCAGATGAA GCTCAACAAG
GTCGAGTTAA GGCTCAACAC CCGACTGGAC GCCTCAGTGG TTAGAGACGA GCCCTTCGAT
GAGGTGGTGA TCGCCGCCGG TGTCGTGCCA AGAGCAATAG ACCTGCCCGG TTTCGATAGC
CCCAAGGTGG TGAATTACCA GCAGGTGCTG AACGGCGAGG TCGAGGTAGG CGAGCGGGTT
GCCCTGATCG GCGCCGGTGG TATCGGCTTC GATATGGCTC ACTATCTAGG AGAGCAGGAG
TCGACCACAC TCAAGCCTGA TACCTGGCTC AAGCAGTGGG GCATAGACAA GGCCTATGGT
GAGCGCGGCG GATTAACCAC GCCTCAGCCA GAACACACAA GCCGAAAAAT TTATCTATTG
CAGCGTAAAA CCAGCAAGAT GGGCAAGGGA CTTGGCAAAA CAACAGGTTG GATCCACCGC
GCTGTGGCTA AGCACCATGA TGTCGAGATG CTAAACGGTG TCAGCTACCA GAAATTCGAT
GAGCTAGGTC TACATATCAA AGTCGGTGAG GAGGCTCAGG TGCTTGAGGT AGACAATGTG
GTGTTATGTG CCGGACAAGA GTCTAATCGC AGCTTGGTCG ATGAGATGAA AAACACAGGT
CTGCCAGTGC ATCTGATTGG CGGTGTGGAT GTTGCCGCCG AACTCGATGC CAAACGGGCG
ATTCGCCAAG GCGCCGAGCT GGCCGCAAGC ATCTAA
|
|---|
| Protein sequence | MSFPHLLEPL DLGFTQLKNR VLMGSMHTGL EEEKGGFEKL AKFYQERAAG GVGLIVTGGI
SPNLRGRLAP NACQLSFPWQ VAKHKVVTSA VHEAGGKICM QILHAGRYGY HPFSQAPSKI
KSPITPFTPS AMSARQVRST IKDYATTAAL AKKAGYDGVE VMGSEGYLIN QFICARTNKR
NDEWGGEFSQ RAKFPVEIVK AIRERVGSDF IIVFRLSMLD LVDNGSSWEE VVQLAKWLES
AGVTIINTGI GWHEARVPTI ATSVPRGAFA WVTERLKQEV SVPLIATNRI NTPEIGEQII
SSGQADMVSM ARPFLADAEF VNKAAAGESQ LINTCIGCNQ ACLDHTFALK RATCLVNPRA
CYETELNFVP ATSKKRIAVM GAGPAGMAFS IYAASRGHQV VLFEAKDEVG GQFNLARKIP
GKEEFDETIR YFTEQMKLNK VELRLNTRLD ASVVRDEPFD EVVIAAGVVP RAIDLPGFDS
PKVVNYQQVL NGEVEVGERV ALIGAGGIGF DMAHYLGEQE STTLKPDTWL KQWGIDKAYG
ERGGLTTPQP EHTSRKIYLL QRKTSKMGKG LGKTTGWIHR AVAKHHDVEM LNGVSYQKFD
ELGLHIKVGE EAQVLEVDNV VLCAGQESNR SLVDEMKNTG LPVHLIGGVD VAAELDAKRA
IRQGAELAAS I
|
|---|
| |