| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1900 |
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| Symbol | asnC |
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| ID | 4921780 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 2195005 |
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| End bp | 2196405 |
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| Gene Length | 1401 bp |
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| Protein Length | 466 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640163468 |
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| Product | asparaginyl-tRNA synthetase |
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| Protein accession | YP_001094025 |
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| Protein GI | 127512828 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0017] Aspartyl/asparaginyl-tRNA synthetases |
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| TIGRFAM ID | [TIGR00457] asparaginyl-tRNA synthetase |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.000597558 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0150191 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGCATTG CATCTGTCGC TTCTGTATTT AAGGGTGATT TTGCGGTTGG TTCGCAAGTT
ACCGTACGCG GTTGGGTAAG AACTCGCCGA GATTCCAAGG CCGGCATCTC TTTTCTTGCC
GTATATGATG GTTCCTGTTT TGATCCCATT CAGGGCGTTG TGCCAAATAG CTTAGACAAT
TATAACGACG AAATCTTACG CCTCACGGCC GGTTGCTCAG TCGTGATGAC GGGTGAACTG
GTTGAGAGCC CAGGTAAGGG TCAAGCATTT GAGATGCAGG TGACTAAGGT TGAGGTCACA
GGTTGGGTTG AAGATCCTGA TACCTATCCT ATGGCGGCCA AGCGTCACTC TATCGAGCAT
CTGCGCGAAC TGGCTCACCT GCGTCCACGC ACCAACATCA TTGGCGCGGT CGCTCGCGTA
CGTAACTGTC TGTCTCACGC CATCCACAAC TTCTACAACG AAGAAGGCTT CATCTGGGTC
TCTACCCCGC TGATCACCGC TTCTGATTGT GAGGGTGCTG GCGAGATGTT CCGCGTCTCG
ACACTGGATC TGGAAAACCT GCCACGCACC GACGATGGCA AGGTCGACTT CAGCGAAGAC
TTCTTCGGTA AGGAATCTTT CCTGACGGTA TCGGGTCAGC TAAACGGCGA GACCTACGCC
TGTGCACTGT CGAAGATCTA CACCTTCGGC CCGACCTTCC GCGCCGAAAA CTCAAACACC
AGCCGTCACC TGGCGGAGTT CTGGATGGTT GAGCCGGAAG TGGCCTTCGC CGATCTGAAC
GATGTTGCCG GTCTGGCCGA GCGCATGCTG AAGTACTGTT TCCGCGCCGT GCTTAACGAG
CGTCGTGACG ATCTAGAATT CTTCGCCCAA CGCGTCGACA AGACAGTTAT CGAGCGTCTA
GAAAGCTTCG TTAACAGCGA TTTCGCTCAG GTAGACTACA CAGACGCCAT CGAGATCCTC
AAGTCATGCG GCAAGAAGTT CGAGTTCGAT GTCGAGTGGG GTATCGACCT GCAATCTGAG
CACGAGCGCT ACCTGGCGGA AGAACACTTC AAGGCACCAG TGGTCGTGAA GAACTATCCA
AAAGATATCA AGGCCTTCTA TATGCGTCTC AACGAAGATG GCAAGACGGT TGCGGCCATG
GACGTACTGG CTCCTGGCAT CGGTGAGATC ATCGGTGGTG CCCAGCGTGA AGAGCGTCTG
GACGTACTAG ATACCCGTCT GGACGAGATG GGTCTGAGCA AGGAAGATTA CTGGTGGTAT
CGTGACCTGC GCCGCTACGG CACAGTGCCA CACTCAGGCT TCGGTCTGGG CTTCGAGCGT
CTGGTCTCTT ACGTGACCGG CGTATCGAAC ATCCGCGACG TGATCCCATT CCCACGCGCA
CCTAAGTCAG CGAACTTCTA A
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| Protein sequence | MSIASVASVF KGDFAVGSQV TVRGWVRTRR DSKAGISFLA VYDGSCFDPI QGVVPNSLDN
YNDEILRLTA GCSVVMTGEL VESPGKGQAF EMQVTKVEVT GWVEDPDTYP MAAKRHSIEH
LRELAHLRPR TNIIGAVARV RNCLSHAIHN FYNEEGFIWV STPLITASDC EGAGEMFRVS
TLDLENLPRT DDGKVDFSED FFGKESFLTV SGQLNGETYA CALSKIYTFG PTFRAENSNT
SRHLAEFWMV EPEVAFADLN DVAGLAERML KYCFRAVLNE RRDDLEFFAQ RVDKTVIERL
ESFVNSDFAQ VDYTDAIEIL KSCGKKFEFD VEWGIDLQSE HERYLAEEHF KAPVVVKNYP
KDIKAFYMRL NEDGKTVAAM DVLAPGIGEI IGGAQREERL DVLDTRLDEM GLSKEDYWWY
RDLRRYGTVP HSGFGLGFER LVSYVTGVSN IRDVIPFPRA PKSANF
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