| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1779 |
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| Symbol | |
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| ID | 4923481 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2035024 |
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| End bp | 2036907 |
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| Gene Length | 1884 bp |
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| Protein Length | 627 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640163340 |
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| Product | alkaline phosphatase |
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| Protein accession | YP_001093904 |
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| Protein GI | 127512707 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00922398 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATAACA AGATGAAAAA AACGGCGATA GCTGTGGTCA TGACAACTTT GGGTCTGACG
GCCTGCAGCG GCGATGAAGG CAAAGATGGT GCAAATGGTA GCAATGGCAC AAACGGTGCG
AGTAGCCTGG TTGCATTTAC CCAGCTGCCT GCGGGCGACC TTGAGTGTCC ACTCGGTGGA
CAGATGATAC AGACAGGCCT GGATCTCAAT GGCAATGGCG TGCTGGACAG CGATGAAGTT
AACGCCGAGC AGACCCAATA CCTTTGCCGT GAGACGGTGT CTGGGCTAAG TGCCGAGCTG
GTGGGGCGTT ATGAGTCTGG CGTCTATGGA CAGAGCGCCG CCGAGATCGT CGGTTTTCAT
GTGGCGAGCA AACGTATCTT CGTGGTGAAC GCCCAGAGCG GCAAGGTGGA TATCGTCGAT
GCGGCCAACT TAGCCGCCAG CCCGGCAGCA GGCAGTGATG CCCTGGTGCT CAACAACCTG
CCTAAGCTGG CAGTGCTGGA TGTGGCGCAA GATCTCGCTC TGCAGCGTCT TGGCGGCGTC
AACAGCCTGG CCATAAATGG CGATCTGCTG GCGGTGGCCA TAGAGCGCGG CGATGAGGCG
GGTAACAGCA AGCAGGGGAT GGGCTATGTT GCCTTCTATC GCATCGATAG CGCCGGTGAA
GCCAGCCTTA TCCATGGTGT CGAGGTCGGT GCATTGCCAG ACAATGTCGT ATTCAGCCAT
GATGGCAAGC AAGTATTGGT GGCCGGTGAA GGTGAGCCGA GCGATGACTA CAGCGTCGAT
CCGCTGGGCA CGGTGGCCAT CATAGCCGTG ACCGATGGTA TACCAGCCAC TAGCGCGACC
TTACTGGATT TCAGCGACTT TAATCTGGGC GGCGCGCGTG AAGCCGAGCT GTCGAGCGAC
ATCAAGATCA ACGGCCCGGG TGCCAGCCGC GCACAAGACT TGGAGCCTGA ATATATCAGC
GTATCGCCAG ACAATAAGCT CGCCTATGTC AGCCTGCAGG AAAACAACGC CATCGCGGTG
ATCGATATTC CAAGCAAAGC GGTCAAGGCC ATCTGGCCCC TGGGCTTTAA GGATTTTGGT
TTAGGGAAGA ACGCGATCGA TGCCAGCGAC AAGGATGATA GGGTCAATAT TCAAGCCTAT
CCGGGCGTGG TTGGCTTGTA TCAGCCCGAT ACGATTGCCA GCTACCAGTG GCATGGCAGC
GACTTTGTGG TAACGGCCAA CGAGGGGGAC TCTCGCGACT ATGGCGGCTT CTCCGAAGAG
GCTCGCGCCG GTGACCTCAC ACTCGATGCT AACCATCCGC AGTTTGCCGC GGCCCAGGAC
AAGACTCAGC TGGCGCGCCT TAAGGTGACG ACCTCAATGG GAGATGAAGA TGGTGACGGC
GACTTTGACA AGATAGTGGC CTACGGCGGT CGCTCATTCT CTATCTGGGA TCAAAACGGT
CAGCAGGTGT TTGACAGCGG CAGCGATTTC TCCCGCATCA CGGCAGCACT GCTGGGGATG
AACTTCAACA ACAATAACGA AGAGAATAAG GGCGACAGCC GCAGCGACGA TAAGGGCGCC
GAGCCCGAGG CGCTGGCGAT TGGCGAGATT GAGGGTAAGC GCTACGCCTT CATCGGCCTG
GAGCGCACCT CTGGTTTCAT GATCTATGAG ATCACCAACC CGTTTGCGGT GAAGTTTGTC
GACTATGTGG TCAATCGTGA CTTCGAGGTT GGCTTCGAGA TCGATGGTAG CGACATCACA
GGTTCGCCTG AGGTGGCGGG GGATCTCGGC CCAGAAGGGA TGAGCTTTGT GGCAGCGGCC
GACAGCCCCA ACGGTAAGCC GCTGCTGATC ATAGGCAACG AGGTGAGTGG CAGCACCAGC
GTGTATCAGT TGTCGCTGCA GTGA
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| Protein sequence | MNNKMKKTAI AVVMTTLGLT ACSGDEGKDG ANGSNGTNGA SSLVAFTQLP AGDLECPLGG
QMIQTGLDLN GNGVLDSDEV NAEQTQYLCR ETVSGLSAEL VGRYESGVYG QSAAEIVGFH
VASKRIFVVN AQSGKVDIVD AANLAASPAA GSDALVLNNL PKLAVLDVAQ DLALQRLGGV
NSLAINGDLL AVAIERGDEA GNSKQGMGYV AFYRIDSAGE ASLIHGVEVG ALPDNVVFSH
DGKQVLVAGE GEPSDDYSVD PLGTVAIIAV TDGIPATSAT LLDFSDFNLG GAREAELSSD
IKINGPGASR AQDLEPEYIS VSPDNKLAYV SLQENNAIAV IDIPSKAVKA IWPLGFKDFG
LGKNAIDASD KDDRVNIQAY PGVVGLYQPD TIASYQWHGS DFVVTANEGD SRDYGGFSEE
ARAGDLTLDA NHPQFAAAQD KTQLARLKVT TSMGDEDGDG DFDKIVAYGG RSFSIWDQNG
QQVFDSGSDF SRITAALLGM NFNNNNEENK GDSRSDDKGA EPEALAIGEI EGKRYAFIGL
ERTSGFMIYE ITNPFAVKFV DYVVNRDFEV GFEIDGSDIT GSPEVAGDLG PEGMSFVAAA
DSPNGKPLLI IGNEVSGSTS VYQLSLQ
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