Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_1767 |
Symbol | |
ID | 4922036 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 2019461 |
End bp | 2023348 |
Gene Length | 3888 bp |
Protein Length | 1295 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 640163328 |
Product | ATP-dependent helicase HrpA |
Protein accession | YP_001093892 |
Protein GI | 127512695 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1643] HrpA-like helicases |
TIGRFAM ID | [TIGR01967] ATP-dependent helicase HrpA |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGAATTCGC CACGTCACCC CCTGTCTCAT GCCTTTCTCA ACCAGTGTTT TCAGGCCGAT GCCTCTCGCA TCAAGCGCCG CCTCCATAGA CTGAAAAAAC AAGCCGACGG CGAGCAGAAA GATGAGGCGC TGGCCCAGTT AGAAGAGCAG GCCATTGCCG CCGCAGCTAA GGTGGAGAGC CGTAGGCAGA ATCGCCCCGA GATCAGTTAT CCCGATGCCT TGCCCGTGTC GCAAAAGCGC GGCGAGATAG CCGAGGCGAT CGCCAATAAC CAGGTGGTGA TTGTGGCCGG TGAGACAGGC TCGGGTAAGA CGACCCAGCT GCCGAAGATC TGTCTCGAGC TTGGCCTGGG CACCCGCGGC CTGATTGGCC ACACCCAGCC AAGACGACTG GCCGCCCGCA GCGTGGCGAC CCGTGTGGCC GAAGAACTCA ATAGCCCACT GGGCGAAGTG GTAGGCTTTA AGGTGCGTTT CGCCGATGCC ATCAAGCCGA CCTCTTACAT CAAGCTGATG ACTGACGGTA TCTTGCTGGC GGAGCTGAGT TCAGACAAAT ACCTGGATCA GTACGACACC ATCATTATCG ATGAGGCCCA CGAGCGAAGC CTGAATATCG ACTTCATCCT GGGTTACCTC AAGAGCGTGC TCAAGCGCCG TCCGGATCTC AAGGTGATCA TCACCTCGGC CACCATAGAC GTGGAGAGAT TCTCTAAGCA TTTCAATAAT GCGCCTGTTA TCGAGGTGTC GGGCCGTACC TATCCGGTGG AGACCCGCTA CCGTCCGCTA GTCGGCGAGC AGGATGAAGA CTTAGATCTC ACCGACGGCA TCTTCGCCGC GGTGGAGGAG CTGATGGCCG AGGGGCCGGG GGATATCCTG ATCTTCCTCA ACGGCGAACG TGAGATCCGC GACCTGGCCG ACCAGCTCAA CAAACAGCAG TATCGCGATA CCGAGGTGTT ACCCCTGTAT GCGCGTCTCT CCTATGGTGA GCAGTCCAAG GTATTTAAGA GTCATCGCGG ACGCCGTATC GTGCTGGCCA CCAACGTGGC GGAAACTTCG TTGACGGTTC CCGGCATCAA GTATGTGATC GACCCGGGCA CGGCGCGCAT CAGCCGTTAC AGCTATCGCA CTAAGGTGCA GCGCCTGCCG ATCGAACCTA TCTCCCAGGC GAGCGCCAAC CAGCGTCAGG GCCGTTGTGG CCGCGTGGCG CCGGGGATCT GTATTCGTCT CTATGATGAG GCGGACTTTA ACAACCGCCC CGAGTTTACC GATCCCGAGA TCCTAAGGAC CAACCTGGCT TCTGTCATTT TGCAGATGCT CTCCATCGGC CTTGGCGACA TCGAAGGTTT CCCCTTCATT CAGCCGCCCG ATGCCAGATA TATCCGTGAT GGTTTCCTGC TGCTGGAAGA GCTGCAGTCG GTGCGTAAAC ACAAGGGCCA GCTGCAACTC ACCCCGCTGG GCCGTCAATT GGCGAGTATC CCTGTGGATC CGCGCCTGGC GCGCATGGTG GTGCAGGCCA AGGAATATGG CTGCCTGCAT GAGACACTGG TGATCACCGC GGGTCTTTCG ATTCAAGATC CCCGCGAGCG CCCAATGGAT AAGAAGCAGG CCGCCGATGA GGCCCACAGA CGCTTCAACG ACAAGGACTC TGACTTCATC GCCTGGGTCA AGCTGTGGGA TCACATCAAG GAGCAGCAGA AAGCCCTGTC TGCCAGTCAG TTCCGTAAGC TGTGTAAGCA GGAGTTTCTC GCCTATCTGC GGGTGCGTGA ATGGCAGGAT CTCTATACCC AGCTGCGACA GGCGGTGCAC GACCTCAAGT GGAAGCTCAA CAGCGAGCCC GCCGACTATG AGCTGCTGCA TAAATCTTTG CTGACCGGCC TGCTGAGCCA TATCGGTTTC AAGGATAAGG ACAACGAGTA TCTGGGGGCG CGTAACCGCA AGTTCTTCGT CTTCCCCGGC TCGCCGCTGG CCAAGAAGGG ACCTAAGTGG ATCATGGCCG CCGAGATGAC CGAGACCTCG CGACTGTTTG CCCGCTGCTG CGCCAAGATC CAGCCTGAAT GGGTCGAGCC CCTGGCCGGC CATCTGGTGA AGAAAAGCTA TGTGGAGCCC CATTTCGAGG CCAAGCAGGG CAGTGTGGTG GCGCTGGAGA ATCAGCAGCT CTACGGCCTG ACCATAGTCA ATCGCCGCCG GGTGCAATAT GGCCCTGTGG AGCCGGTGGA GGCCCGCGAG ATCTTTATTC GCAGCGCCTT GGCCGAAGGG GAGCTGCGCA CCAAGGAGGC ATTTTTTGTC AACAACCGTG CGCTTATCGA CGATATCGAG GCGCTGGAGC ACAAGTCCCG CCGCCGCGAC ATCTTGGTGG ACGAGCAGGC GCTGGTGGAT TTCTATGAGG CGCGCATTCC CGAGGGGATC TACAACGCGC CTAAGCTGCT GACCTGGTGG AAGCAGGAGA AGAAGCGTCA GCCGCATCTG CTGGACTTTG AACGTGAGCA GCTGATGAAG CGCAGCGACG AGCATATCTC GGCGCTGGAC TTCCCCGACA GCTGGCATCA GGGCAACTTT AACCTGCCCC TGAGTTATCA CTTCGAGCCG GCGGACGTAG ATGACGGCGT ATCGGTGCAT CTTCCCGTCG CGCTGCTTAA CCAGATAGAG GCCCAGGGCT TCGACTGGTT GGTGCCGGGG CTGAGGGAAG AGAAGATCAC CGCGCTGATC AAGTCCCTGC CTAAGACACT GAGACGTAAC TTCGTTCCGG CGCCGGATTA TGCCAGGGCC TGCTTACAGG CGATGGCTAA TACTAATAGC AGCAGTGAGA CGAGCCTGCT GGAGGCCATG TGTAAGCAGC TGCTGCGCAT GAGCGGCGTG CGTATCTCCG TCGATGATTT CGATCTCACC CAGCTCGCGC CGCATCTTCT GATCAACTTC AAGGTGGAAG ATGACAAGGG TAAGTTGATC GCACAGGGCA GGGAGCTTGA GCAGCTAAAA GATAAGCTAC AGGGCAGGGT AACCCAGGCG ATTCGCAATG TTGCCGAGAG CGGCATAGAG CAAAGCGAGC TGACCCAGTG GAGCTTTGGC GACTTGCCCA AACAGTATGA GAAGAAGCGG GGGAACTTCC AGGTGAAGGC CTTCCCCGCG CTGGTGGACA ACAAAGACAG CGTGGCCATC AAGCTGTTTG ATGATGAGCA TGAGGCCGGC CGCTGCCATA AGGCGGGTCT GCAGCGCCTC TTGCTGCTCA ACATGCCATC GCCGGTGAAG CACCTGCAGA ACACCCTGCC CAACAAGGCC AAGTTGGCCA TGTACTTCAA CCCCTTTGGC CAGGTGCAGT ATCTCATCGA CGATATCCTG TCGGCGGCGG TGCAGCAGTT GCTGGATGAG AAGGGCTTAG ATGTGCGCAG CGCCGAGCAG TTCGAGCAGG CTAAAGATGT GGTGCGTCAG GATCTTAACC CCACGGCGGC CAAGATCGCG CTGCAGGTGG AGGAGATCTT GACCCTGTAT CAGAAGGTGA AGAAGCGCCT CAAGGGCAAG ATCAGCCTGG ATATCGCCTT TGCAATGAGC GACATTCAGA CCCAGTTGGA TAACCTGGTA TTCAAGGGCT TTGTCGAGCA GTGCGGTTGG CAGCGGCTTT CTGATTTAAT CAGGTATATC AAGGCGATAG ATAATCGTTT AGATAAGCTT CCCGTGGATC CTAACCGTGA CCGCCTGCAT CTGCATAGCA TCAACAATGT GCAACAGACC CTGGCAGCCC AGCTGGCCAA GGTGCCCCGC AGCGCGCCTG TGCCCGAGGC GCTGCAGGAG GCTCGCTGGA TGATAGAGGA GTATCGCGTC TCCTGTTTCG CCCAGGTGTT AGGTACCGCC TATCCCATCT CGGAGAAGCG GATCCTCAAC CGCATCGCCG AAGCCTGA
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Protein sequence | MNSPRHPLSH AFLNQCFQAD ASRIKRRLHR LKKQADGEQK DEALAQLEEQ AIAAAAKVES RRQNRPEISY PDALPVSQKR GEIAEAIANN QVVIVAGETG SGKTTQLPKI CLELGLGTRG LIGHTQPRRL AARSVATRVA EELNSPLGEV VGFKVRFADA IKPTSYIKLM TDGILLAELS SDKYLDQYDT IIIDEAHERS LNIDFILGYL KSVLKRRPDL KVIITSATID VERFSKHFNN APVIEVSGRT YPVETRYRPL VGEQDEDLDL TDGIFAAVEE LMAEGPGDIL IFLNGEREIR DLADQLNKQQ YRDTEVLPLY ARLSYGEQSK VFKSHRGRRI VLATNVAETS LTVPGIKYVI DPGTARISRY SYRTKVQRLP IEPISQASAN QRQGRCGRVA PGICIRLYDE ADFNNRPEFT DPEILRTNLA SVILQMLSIG LGDIEGFPFI QPPDARYIRD GFLLLEELQS VRKHKGQLQL TPLGRQLASI PVDPRLARMV VQAKEYGCLH ETLVITAGLS IQDPRERPMD KKQAADEAHR RFNDKDSDFI AWVKLWDHIK EQQKALSASQ FRKLCKQEFL AYLRVREWQD LYTQLRQAVH DLKWKLNSEP ADYELLHKSL LTGLLSHIGF KDKDNEYLGA RNRKFFVFPG SPLAKKGPKW IMAAEMTETS RLFARCCAKI QPEWVEPLAG HLVKKSYVEP HFEAKQGSVV ALENQQLYGL TIVNRRRVQY GPVEPVEARE IFIRSALAEG ELRTKEAFFV NNRALIDDIE ALEHKSRRRD ILVDEQALVD FYEARIPEGI YNAPKLLTWW KQEKKRQPHL LDFEREQLMK RSDEHISALD FPDSWHQGNF NLPLSYHFEP ADVDDGVSVH LPVALLNQIE AQGFDWLVPG LREEKITALI KSLPKTLRRN FVPAPDYARA CLQAMANTNS SSETSLLEAM CKQLLRMSGV RISVDDFDLT QLAPHLLINF KVEDDKGKLI AQGRELEQLK DKLQGRVTQA IRNVAESGIE QSELTQWSFG DLPKQYEKKR GNFQVKAFPA LVDNKDSVAI KLFDDEHEAG RCHKAGLQRL LLLNMPSPVK HLQNTLPNKA KLAMYFNPFG QVQYLIDDIL SAAVQQLLDE KGLDVRSAEQ FEQAKDVVRQ DLNPTAAKIA LQVEEILTLY QKVKKRLKGK ISLDIAFAMS DIQTQLDNLV FKGFVEQCGW QRLSDLIRYI KAIDNRLDKL PVDPNRDRLH LHSINNVQQT LAAQLAKVPR SAPVPEALQE ARWMIEEYRV SCFAQVLGTA YPISEKRILN RIAEA
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