Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_1764 |
Symbol | |
ID | 4923524 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 2015698 |
End bp | 2017404 |
Gene Length | 1707 bp |
Protein Length | 568 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 640163325 |
Product | nickel-dependent hydrogenase, large subunit |
Protein accession | YP_001093889 |
Protein GI | 127512692 |
COG category | [C] Energy production and conversion |
COG ID | [COG0374] Ni,Fe-hydrogenase I large subunit |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCAAAC GTGTAGTTAT CGACCCTATC ACTCGAATCG AAGGCCATCT GCGCATCGAG GTCGAAGTCG ACGAAAATAA TGTTGTTCAA AAAGCCTGGT CCTCCTCCAC CCTTTGGCGT GGCATCGAGG TGATACTCAA GGGACGTACC CCGATGGATG TGGGCCTTAT CGTTCAACGT ATCTGTGGTG TCTGTACCTA TTCACACTAT CGCTGTGGTA CCGAAGCGGT TGAGAACGCC TTAGGGGTGA AGATCCCGCT TAACGCCAAG TATCTGCGCT CGCTCATGCA AACCTCGCTT TATATGCATG ACCACATAGT GCACTTCTAT CACCTCCACG GCCTGGACTG GGTGGATGTG GTCTCTGCGC TGAGTGCCGA TCCGGCAGCC GCCGCACAGG TGGCGCTGAA ATATACCCAC AACCCAATCG CCGCCGGCGA GGGTGAGCTG CGCGCGGTAC AAGAGCGCGT CAAGGGCTTC GTCGAAACCG GTAAACTTGG CCCCTTCGCC AACGCTTACT GGGGCAACGG CACCTATAAG TTTACCCCTG AGCAGAACCT GATCGCCCTG TCTCACTACC TCAAGGCACT GGAAGTACAG CGCGTTGCGG CCGAGATGCT GGCCATCTTC GGTGGTAAGC AGCCGCATCC TCAGTCACTG GTGGTCGGTG GTGTTACCTC GGTGCGTGAC ATGTTAAGCC CTGCCCGTCT GCAGGAGTGG AAACAGAAAC ACGCCATCGT GGCCGACTTT ATCAACCGCG CCTACAAGGC GGATATCGTC ATGGCGGCCG AAGCCTTCGG CGGCGAGCCT AGCGTGCTCG GCGGCGTCAA CGTGAAGAAC TTCCTGGCGA CCAACGACTT CGTCCTCGCC GACGGTCAGT ACATGTTCGA CCAGGGTGTG ATCATGAATG GCGATCTGGC CAATGTCACC GACATCAACC CAGATCTGAT CAAGGAAGAT GTGAGCCACG CCTGGTATGA CGCAAGCGAA CCACAACATC CTTATGAAGG CACCACAATC CCTAACTACA CAGGGTTCGT GGAGCGCGAC ACAGTCTACG GCAAGCTGCC GACACTGGAT GGCGACGGCA AGTACAGCTG GGTGAAATCA CCACGCTATC AGGGTGAGCC GGTCGAGGTA GGTCCACTCT CTAGCCTGCT GGTCAGCTAT GCCCGCGGCA ACAAGGTGGT GGTCGAAGCG GTAAACGGCC TGCTGGAGGC CACTGGCCTA CCGGTTGAAG CCCTGTTTAC TACACTTGGC CGCACCGCGG CGCGCATGCT GCAAACCGTT ATCGTGGCCG AGCAGGGTCT TAAGACCTTC GATGCCCTGA TCAACAACCT GCTTGTGGAT GAGGCCACCT ATGTGAAGCC AGAGATCGAC CCAAGCAAAG AGTATGTGGG TCACGCCATG ATCGAGGCGC CGCGCGGCAT GCTCAGCCAC TGGATCCGCA TCAAGAACGG TCTGGTGGAG AACTATCAGG CTGTGGTGCC CACCACCTGG AACGCAGGCC CTGTGGACGC CGCCGGTAAG GTAGGTCCCT ATGAGGCATC CCTATTGGGC CTCAAGCTGG AAGACCCAAC CAAGCCACTG GAAGTGATAC GTATCATCCA CTCATTCGAC CCATGTATGG CCTGTTCGGT ACACGTGATG GACTATAAGG GCCAAGATCT GGGTGAGTTC CGTATCGACC CAAACGGCAA TAACTAA
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Protein sequence | MSKRVVIDPI TRIEGHLRIE VEVDENNVVQ KAWSSSTLWR GIEVILKGRT PMDVGLIVQR ICGVCTYSHY RCGTEAVENA LGVKIPLNAK YLRSLMQTSL YMHDHIVHFY HLHGLDWVDV VSALSADPAA AAQVALKYTH NPIAAGEGEL RAVQERVKGF VETGKLGPFA NAYWGNGTYK FTPEQNLIAL SHYLKALEVQ RVAAEMLAIF GGKQPHPQSL VVGGVTSVRD MLSPARLQEW KQKHAIVADF INRAYKADIV MAAEAFGGEP SVLGGVNVKN FLATNDFVLA DGQYMFDQGV IMNGDLANVT DINPDLIKED VSHAWYDASE PQHPYEGTTI PNYTGFVERD TVYGKLPTLD GDGKYSWVKS PRYQGEPVEV GPLSSLLVSY ARGNKVVVEA VNGLLEATGL PVEALFTTLG RTAARMLQTV IVAEQGLKTF DALINNLLVD EATYVKPEID PSKEYVGHAM IEAPRGMLSH WIRIKNGLVE NYQAVVPTTW NAGPVDAAGK VGPYEASLLG LKLEDPTKPL EVIRIIHSFD PCMACSVHVM DYKGQDLGEF RIDPNGNN
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