Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_1684 |
Symbol | |
ID | 4920454 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 1934337 |
End bp | 1934933 |
Gene Length | 597 bp |
Protein Length | 198 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 640163246 |
Product | lysine exporter protein LysE/YggA |
Protein accession | YP_001093810 |
Protein GI | 127512613 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1280] Putative threonine efflux protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.00116285 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 0 |
Fosmid unclonability p-value | 0.0000017661 |
Fosmid Hitchhiker | No |
Fosmid clonability | unclonable |
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Sequence |
Gene sequence | ATGGAACTGG TTTTCGCCAT CGCCCTATTT GCCTTTTCCT CGGGGATCAC CCCCGGGCCC AACAACATCA TGTTGATGAC CTCTGGGGTA AACTTTGGCA TCCGCCTGAG CCTGCCCCAT CTGGCGGGGA TCTGTATCGG CTTTCCCTGC ATGGTACTGG CGATAGGTCT TGGGCTGAGC GCCGTGTTTC AGGCCTATCC CCTGCTGCAC CTTATCATCA AGTATGTCGG CATCGCTTAC CTGCTCTACC TGGCCTGGTT GATCGCCAAC AGCAGCAGCC GCATGGAGGG CAAACAGACG GCAAAGCCTC TCTCCTTCGT GCAGGCCGCG GCCTTTCAGT GGGTCAACCC TAAGGGCTGG ATCATGGCCG TCGGCGCCAT TGCCACCTTT ACCGTGATGG ACAAGCCGCT GACGCCTCAG GTGCTCACCA TCGCCAGCGT CTTCTTCAGC GTCGCCCTGC CCTGCGCCCT GGTGTGGCTC GGCTTCGGCG TGGCGCTCAA GCGGCTACTT AAGCATCAAG GGCAGCAAAA AGCCTTTAAC ATCGCCATGG CGCTCTTGCT TGTGGCCTCT ATCATCCCTA TGATCGCTCC TCAATAA
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Protein sequence | MELVFAIALF AFSSGITPGP NNIMLMTSGV NFGIRLSLPH LAGICIGFPC MVLAIGLGLS AVFQAYPLLH LIIKYVGIAY LLYLAWLIAN SSSRMEGKQT AKPLSFVQAA AFQWVNPKGW IMAVGAIATF TVMDKPLTPQ VLTIASVFFS VALPCALVWL GFGVALKRLL KHQGQQKAFN IAMALLLVAS IIPMIAPQ
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