Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_1672 |
Symbol | |
ID | 4920521 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 1922046 |
End bp | 1922945 |
Gene Length | 900 bp |
Protein Length | 299 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 640163234 |
Product | 3-hydroxyisobutyrate dehydrogenase |
Protein accession | YP_001093798 |
Protein GI | 127512601 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG2084] 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases |
TIGRFAM ID | [TIGR01692] 3-hydroxyisobutyrate dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.715505 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.000314937 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAATACAG TTGCATTTAT CGGATTAGGT AACATGGGTG GCCCGATGGC GGTCAACCTG GTGAAGGCTG GCTACACGGT TAAGGCCTTC GATCTCTCTC AGACGGCCCT GAGCCATGTG GTCGAGGAGG GTGCCATGCA GGCACCGAGT GCCTGTGCGG CAGCGGCGGC GGCCGATGTG GTGATCACAA TGTTGCCTGC GGGCAAGCAT GTGCGCAGTC TCTATCTGGG AGACGAGCAG AACAAAGGCA TCATAGATGT GGTGGCCGAC GGCACCCTGC TCATCGACTG TTCTACCATA GACGCCGAGA GCGCACGTTT CGTCGCCGAG CAGGCCAAGA CCAAGGGGCT GGAGTTTATC GACGCGCCGG TATCGGGCGG CACGGCCGGT GCAGCGGCCG GAACCCTGAC CTTCATCTGT GGCGGCAGCG ATACCGCTTT CGAGCAGGCC CAGGGCGTGC TGAATGTTAT GGGTGCCAAT ATCTTCCACG CCGGCGGCCC GGGTGCCGGT CAGGTGGCCA AGATCTGTAA CAACATGCTG CTGTCTGTTT TGATGGTTGG CACCAGCGAG TCGATTCAGA TGGGGATCGA CCACGGACTG GATCCTAAGG TGCTCTCAGA GATCATGAAG GTCAGTAGTG GTGGTAATTG GACGCTAGAT AAATATAATC CTTGTCCAGA TGTGATGGAA AACGTGCCAT CATCAAATGG TTACCAGGGT GGATTCATGG TTGATCTCAT GGTGAAAGAC TTAGGTCTGT CCCAGGAGGC GGCCTTGCTC TCTAACTCGA GCACCCCAAT GGGCGCCTTG GCCCGTAGCC TGTACGTGAA TCATGCCCGT CAGGGCAATG GTAAGCGTGA TTTCTCCAGT ATTTTTGAGC AGTTTAATAA AAAAGGGTAA
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Protein sequence | MNTVAFIGLG NMGGPMAVNL VKAGYTVKAF DLSQTALSHV VEEGAMQAPS ACAAAAAADV VITMLPAGKH VRSLYLGDEQ NKGIIDVVAD GTLLIDCSTI DAESARFVAE QAKTKGLEFI DAPVSGGTAG AAAGTLTFIC GGSDTAFEQA QGVLNVMGAN IFHAGGPGAG QVAKICNNML LSVLMVGTSE SIQMGIDHGL DPKVLSEIMK VSSGGNWTLD KYNPCPDVME NVPSSNGYQG GFMVDLMVKD LGLSQEAALL SNSSTPMGAL ARSLYVNHAR QGNGKRDFSS IFEQFNKKG
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