| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1654 |
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| Symbol | sdhB |
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| ID | 4922731 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1901344 |
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| End bp | 1902051 |
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| Gene Length | 708 bp |
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| Protein Length | 235 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640163216 |
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| Product | succinate dehydrogenase iron-sulfur subunit |
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| Protein accession | YP_001093780 |
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| Protein GI | 127512583 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0479] Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit |
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| TIGRFAM ID | [TIGR00384] succinate dehydrogenase and fumarate reductase iron-sulfur protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.224202 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATTTGA AGATTGCTAT TTATCGCTAT AATCCTGAAG TAGACACTAA GCCTTACATG
AAGGATTACA CGCTAGAAGT GGCTGACGGT ACCGATATGA TGGTGCTGGA TGTCCTGATG
CAGCTGAAGG TACAAGACCC AACGCTGGCG TTCCGTCGCT CATGCCGTGA AGGTGTTTGT
GGTAGTGATG GGGTAAACAT GAACGGTAAG AACGGTCTGG CCTGTATCAC ACCAATTTCT
ACCTTCAAGG GTAAGAAGCT GGAGATACGT CCACTACCGG GTATGCCTGT GGTTCGTGAC
CTGATTGTTG ACCTGACTCA GTTCTACAAG CAGTACGAGA AGATCAAGCC TTACCTGATC
AACGACGACA AGACACCGGC CCGTGAACAT CTGCAATCGC CAGAAGAGCG TGCGCACCTG
GACGGTCTGT ATGAGTGTAT CATGTGTGCG TGTTGTTCAA CGGCTTGTCC ATCATTCTGG
TGGAACCCAG ACAAGTTCAT CGGTCCAAGC GGCCTGTTGC ATGCCTATCG TTTCCTTATC
GATAGCCGCG ATACCGCCAC CGAAGAGCGT CTGTCTGAGC TCGACGATGC TTACAGCGTA
TTCCGTTGCC ATGGCATCAT GAACTGTGTT GACGTTTGTC CTAAAGGACT CAACCCGACT
AAAGCAATTG GACACATCAA GTCTATGCTG CTTAAGCGAG CTGTCTAA
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| Protein sequence | MNLKIAIYRY NPEVDTKPYM KDYTLEVADG TDMMVLDVLM QLKVQDPTLA FRRSCREGVC
GSDGVNMNGK NGLACITPIS TFKGKKLEIR PLPGMPVVRD LIVDLTQFYK QYEKIKPYLI
NDDKTPAREH LQSPEERAHL DGLYECIMCA CCSTACPSFW WNPDKFIGPS GLLHAYRFLI
DSRDTATEER LSELDDAYSV FRCHGIMNCV DVCPKGLNPT KAIGHIKSML LKRAV
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