| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1653 |
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| Symbol | sdhA |
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| ID | 4921622 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1899567 |
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| End bp | 1901333 |
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| Gene Length | 1767 bp |
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| Protein Length | 588 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640163215 |
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| Product | succinate dehydrogenase flavoprotein subunit |
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| Protein accession | YP_001093779 |
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| Protein GI | 127512582 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
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| TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup
[TIGR01816] succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00109405 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGTATTC CAGTACGTGA GTTTGATGCA GTCGTAATTG GCGCCGGTGG CGCGGGTATG
CGAGCTGCAC TACAGATTTC TAAAGAAGGT AAGAGCTGCG CGCTGTTATC TAAAGTATTC
CCAACGCGTT CTCATACCGT TTCTGCCCAG GGTGGTATTA CCGTTGCCCT AGGTAACGCC
CATGAAGACC ATTGGGAACA GCACATGTAC GATACCGTTA AGGGTTCCGA CTTCATCGGT
GATCAAGACG CGATCGAATT TATGTGTCAA ACCGGTCCAG AAGCCATTAT CGAACTTGAG
CACATGGGTT TGCCATTCTC TCGTTTCGAT AACGGTAAGA TCTATCAGCG TCCTTTCGGC
GGCCAATCGA AGAACTTCGG TGGCGAGCAG GCGGCACGTA CCGCTGCGGC GGCAGACCGT
ACCGGTCACG CCCTGTTGCA CTGTCTATAC CAACAGAACG TTAAGCATAA GACTGAAGTC
TTCTCTGAGT GGTATGCACT GGATCTGGTG AAGAACGAAG ACGGTGCCAT CGTAGGTTGT
ACTGCAATCG AAATCGAAAC CGGCGAAATC GTTTACTTCA AGTCTAAGGC CACCATTCTG
GCTACCGGTG GTGCGGGTCG TATCTACGCC TCTACTACTA ACGCTCACAT CAACACCGGT
GACGGTGTCG GCATGGCAAT GCGCGCTGGC GTGCAGATGC AAGACATGGA GATGTGGCAG
TTCCACCCAA CCGGTATCGC CGGCGCGGGT GTACTGGTAA CCGAAGGTTG TCGTGGTGAA
GGCGGATACC TGCTGAACAA AGACGGCGAG CGCTTCATGG AGCGTTATGC GCCAAACGCG
AAAGACCTGG CCTCTCGTGA CGTGGTAGCA CGTTCTATGA TGACTGAGAT CCGTGAAGGT
CGTGGCCTCG ACGGTCCACT AGGTCCTCAC TGTCTACTGA AACTCGATCA CTTAGGTAAA
GAGACGCTTG AAGCACGCCT ACCAGGCGTT TGTGAACTGT CTCGTACCTT CGCGCATATC
GATCCAGCCG ATGGCCCAAT CCCTGTACTG CCAACCTGTC ACTACATGAT GGGTGGTCTG
CCTGCTAAGG TGAGCGGTCA GGTGATCCGT AAGAATGAAG ATGGCAGCGA AAGCGATGTC
GTTGGTCTGT TTGCCGTGGG TGAGATTGCC TGTGTATCGG TACACGGTGC GAACCGCCTG
GGTGGTAACT CACTACTCGA CCTCGTGGTC TTTGGCCGCG CAGCGGGTCA GCACCTGGGT
AAGGCGCTGG ATGAGACTGC CGATCCTAAA GAAGCGAGCG CCGATGAGAT TGCTAAGTCG
CTTGAGCGTC TAAATCGTTG GGAAAGCAAC AAAGACGGTG AAGATCCTGC GCAGATCCGT
AAAGATCTTC AGCTTTGTAT GCAGCTTAAC TTCTCGGTAT TCCGTACCGG CGAGGCAATG
GCAGAAGGTC TTGAAGAGCT TAAGGCGATT CGTGAGCGTC TGGCTAATGC CAAGCTGTCT
GACAACTCAA GAGAGTTCAA CACTCAGCGT ATCGAGTGTC TAGAGCTAGA TAACCTGATG
GCGACAGCAA TTGCGACTGC TTATGCGGCG AACTTCCGTC AAGAGAGTCG TGGTGCGCAT
TCACGTGAAG ACTTCCTCGA GCGTGATGAT GAGAACTGGT TGTGTCACAG CTTGTTCGAT
CCTCAGACCG AACAGATGAC CAAGCGTGCG GTAAACATGG AGCCTAAGCT TCGTGAAGCC
TTCCCGCCGA TTAAGCGTAC CTACTAA
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| Protein sequence | MSIPVREFDA VVIGAGGAGM RAALQISKEG KSCALLSKVF PTRSHTVSAQ GGITVALGNA
HEDHWEQHMY DTVKGSDFIG DQDAIEFMCQ TGPEAIIELE HMGLPFSRFD NGKIYQRPFG
GQSKNFGGEQ AARTAAAADR TGHALLHCLY QQNVKHKTEV FSEWYALDLV KNEDGAIVGC
TAIEIETGEI VYFKSKATIL ATGGAGRIYA STTNAHINTG DGVGMAMRAG VQMQDMEMWQ
FHPTGIAGAG VLVTEGCRGE GGYLLNKDGE RFMERYAPNA KDLASRDVVA RSMMTEIREG
RGLDGPLGPH CLLKLDHLGK ETLEARLPGV CELSRTFAHI DPADGPIPVL PTCHYMMGGL
PAKVSGQVIR KNEDGSESDV VGLFAVGEIA CVSVHGANRL GGNSLLDLVV FGRAAGQHLG
KALDETADPK EASADEIAKS LERLNRWESN KDGEDPAQIR KDLQLCMQLN FSVFRTGEAM
AEGLEELKAI RERLANAKLS DNSREFNTQR IECLELDNLM ATAIATAYAA NFRQESRGAH
SREDFLERDD ENWLCHSLFD PQTEQMTKRA VNMEPKLREA FPPIKRTY
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