| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1642 |
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| Symbol | |
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| ID | 4923972 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1879360 |
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| End bp | 1882428 |
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| Gene Length | 3069 bp |
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| Protein Length | 1022 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640163204 |
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| Product | peptidase M11, gametolysin |
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| Protein accession | YP_001093768 |
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| Protein GI | 127512571 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1361] S-layer domain |
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| TIGRFAM ID | [TIGR03296] M6 family metalloprotease domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTTCAG TTCATTGCGC AGCTGCGCGT ACCGATTCTA CTTTCCTGAA AACCTTTGGT
TTGGGCCTAT TGGGCGCAGG CCTGTTGTCG GCGTCGGCTA TCATGCCTGC AGATGCGGGC
ACTCATGGTG AACAAACCTC TGCGGCGGCC CAGGCTAAAC GTGATGCCAA GCAACAGGCG
CGTCTGACTC ATAAGGCGGA ACTTGAAACT CAGACGCTGC AACTTTCTGC AGTTGCAGCG
CAATACCTGG ATGCCACTAA GTCTAATGGT GCATCTCATG CCTCTGACGC CGCGCTTTAC
CAGCAACTTG AAGCGCTGGT GGCGGCTAGA CAAGTAGAAC AGCAATCACT CATCGCACTC
GATCCTTTCA GTGTCGTTTC TTCTGTACTG CCAACGGCTA AGCGTCGTGG CATACCCGCC
GAGATCCAAG CCAAACTAGC CCAGAAAAAG GCAATCAGCG GTGAGCTGGA AATGGTCTAT
GAAGATTTTG ATGACGCAGG TGAAAATCGT CTGCAGTACA TGGTGCGCAC CGAAACTGGT
CTGGTTAAAT TTTTCTTGGC TTCAGGTAGT TCAAAAGCTC AGGCTAATCA ATTACAACCC
GGAGCAAAGG TTCGTGCAGA AGGTTGGCTA TTTGGCGGCG ATGAGGCTGG CGATGCCTTA
ATTGGCGATC TCGAAGTGCT TGCCCTAACC GATGGCAACA CAGTTTCCTC TTCGGGCACC
GGCGCTGCGC TTTCTCTTAC CGATACCACT GGTGAACAGC GCACCTTAGT ACTGCTGGTT
AATTTCCAAG ACAATCCTCA ACAGCCTTGG ACTCTGGCCG AAGTACAACA GATGGTATTT
GGCAAAGTCA ATGATTTCTA TCGCGAGGCC TCATACGGTC AAACTTGGTT AACTGGTGAT
GTTAAAGGTT ATGTAACCCT GCCAATCAAC AGTACTTGTG ACTATTTCGG CATGGACAGC
TACGCGCAGC AGGCGGCCCG CGATAGCGGT ATCGACGTCA GCCAGTATCA GCGCTTAGTC
TATATGATGC CTCAAAACAG CAGCTGTGGC TGGCGTGGTC AGGGTACAGT GGGTGGTTCA
CCTTCGCGTG CTTGGATTAA TGGTGAGCTA AATCTGATGA CTATCGGTCA CGAACTGGGT
CATAACCTGG GACTCAAGCA CGCTAAAGAA CTTAACTGCG GTAGCGGTTA TCTCAGCGAT
GCTTGTGTCG AGATCACTTA TGGCGACACC CTGGATATCA TGGGTAAGTC TGAGGGGCAC
TTTAACCTCT TCAATAAGGC GCGTTTAGGT TGGCTGAGTG AGTCTCGTGG TGAAATCGCA
ACAGCCGATG CCGATGGTAC TTATCGTCTT GAGCCGTTAG TGGGTGATTC ACAAGGTGGT
GCTAAGGGAT TAAAGGTACG TCGTGGTACC GATAGCCTGA CTGGTGAGCC ATTATGGTAT
TACCTAGAGT ATCGTCAAGC ACAAGGTTTT GACAGCTTTA TGGCTGGTAA AGCGGTTACT
GAAGGCGTAT TGGTACACCT AAATAGCAGT GCACAAGATA TCGAAAGCAG CCAGCTACTG
GATATGACAC CAAAGAGTTC ACTCTATGAC CTGGATGATG CGGCGCTTCA GGCAGGTTAT
AGCTATAGCG ATGACACTGC TGGTGTAACT ATTACCACAG AGTCGGTAGA TAACGCTGGT
GTTGACGTTA CCGTGGCCTA TTCAGGTGGC ACATGTGTAC AGGCTAATCC TACACTTGCG
CTTTCTCAAA ACAGTGATTG GGTTGCACCA GGTACAGCTG TTACTTATAG CGCAACTGTA
ACCAACAACG ATAGCTTAGA GTGCGGTGAT TCTCAGTTTA GTGTTAACGT TCAGGTACCC
GCTAATTGGA GTGCCAGCAG TGCAAGCCTA AGCTTGGCAC CCGGCGCCAC AGCTAATGTG
AGCTTTAGTG TCGTTTCGAG CGGCGATGCC AACGACGGTT TCTATGACCT AGATGTCACC
GCGTACAATG CACAAGATAG CAATCTAGTG GCTACCGGAC TGGTTAGCTA TGTTGTTCAG
GCTCCAGTTG CACAGTGTGT GTTAGCAGCG CCTCAGTTCG TACTGACCAA CAACAGCAGC
GGTGAGGTTG CACCCGGTAC AGGCGTGGTT TACCAAGGCA CAGTGACTAA TCTAGACAGT
GATAGCTGCG ATGCGAGCGA CTTCAATTTG GCAGCCAATG TGCCAGCGGG TTGGTCGGCA
ACTGCGACTA AGGTGAATCT TGCTCCTGGC CAAAGCCAGA ACGTCAGCCT AACGGTGACT
TCTAGCCTAA GCGCAGCCGA TGGACAATTT GATTTCAACC TGATTGCTAG CAATGGTCAA
AATGCGGGAC TACAAAGCAG TGCGAATGCC AGCTATACGG TTCTTGATCC TGCAAAGCAA
TGCACTCTGG CTCAACCAAG TGTCAGCGTG AGCGGTGGAG CTGGCGAGTA TGATGCGGGT
AGCCTGGTAC CCTATACAGT GACAGTGACA AACCAGAATG CTGACAGCTG TGCCGATGCC
GTGTTTGTGA TCAGCGCAAC CGTACCTCAG GGCTGGAACG CCAACGGGGC GACCGTTAGC
CTAGCAAGTG GTCAAAGTAC GAGTGTCGTG GTGAGTGTTA GCTCTGCGCA GTCTGCGACA
GCAGGTGCCT ATGGTCTGGG CTTTAGCGCG GCAGATAAGA GCGACAATCA ATATCAAGCA
AGCGCACAGG CACAGTACAA GGTGGCTCAG CAAGCGAATA CAGCACCGGT TGCGGTAAAC
GACAGTGCAT CGGTATCTAG CGGTTCATCA GTCATCATCG CGGTGCTGAG CAATGACAGT
GACCCTGAAG GTGATACCTT AACTGTGGTT AGCGTGACTC AAGGTAGCAA AGGTAGCGTA
ACCTTGCTGG CCGATGGTAG CGTGAAATAT ACACCGGGTA AGCGTTTCAA GGGTAGCGAT
AGCTTTAGTT ATACCATTAG CGACGGTGAG CTAACTGCGA CGGCGACAGT GACCATAGGT
CAGAGCAGCG ACAGCACTGG TGGCAATACC GGTGGCGGTA CTGGCGGCAA AGGTAACGGT
AAGAAGTAA
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| Protein sequence | MSSVHCAAAR TDSTFLKTFG LGLLGAGLLS ASAIMPADAG THGEQTSAAA QAKRDAKQQA
RLTHKAELET QTLQLSAVAA QYLDATKSNG ASHASDAALY QQLEALVAAR QVEQQSLIAL
DPFSVVSSVL PTAKRRGIPA EIQAKLAQKK AISGELEMVY EDFDDAGENR LQYMVRTETG
LVKFFLASGS SKAQANQLQP GAKVRAEGWL FGGDEAGDAL IGDLEVLALT DGNTVSSSGT
GAALSLTDTT GEQRTLVLLV NFQDNPQQPW TLAEVQQMVF GKVNDFYREA SYGQTWLTGD
VKGYVTLPIN STCDYFGMDS YAQQAARDSG IDVSQYQRLV YMMPQNSSCG WRGQGTVGGS
PSRAWINGEL NLMTIGHELG HNLGLKHAKE LNCGSGYLSD ACVEITYGDT LDIMGKSEGH
FNLFNKARLG WLSESRGEIA TADADGTYRL EPLVGDSQGG AKGLKVRRGT DSLTGEPLWY
YLEYRQAQGF DSFMAGKAVT EGVLVHLNSS AQDIESSQLL DMTPKSSLYD LDDAALQAGY
SYSDDTAGVT ITTESVDNAG VDVTVAYSGG TCVQANPTLA LSQNSDWVAP GTAVTYSATV
TNNDSLECGD SQFSVNVQVP ANWSASSASL SLAPGATANV SFSVVSSGDA NDGFYDLDVT
AYNAQDSNLV ATGLVSYVVQ APVAQCVLAA PQFVLTNNSS GEVAPGTGVV YQGTVTNLDS
DSCDASDFNL AANVPAGWSA TATKVNLAPG QSQNVSLTVT SSLSAADGQF DFNLIASNGQ
NAGLQSSANA SYTVLDPAKQ CTLAQPSVSV SGGAGEYDAG SLVPYTVTVT NQNADSCADA
VFVISATVPQ GWNANGATVS LASGQSTSVV VSVSSAQSAT AGAYGLGFSA ADKSDNQYQA
SAQAQYKVAQ QANTAPVAVN DSASVSSGSS VIIAVLSNDS DPEGDTLTVV SVTQGSKGSV
TLLADGSVKY TPGKRFKGSD SFSYTISDGE LTATATVTIG QSSDSTGGNT GGGTGGKGNG
KK
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