| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1632 |
|---|
| Symbol | |
|---|
| ID | 4922100 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 1867128 |
|---|
| End bp | 1868360 |
|---|
| Gene Length | 1233 bp |
|---|
| Protein Length | 410 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 640163194 |
|---|
| Product | LolC/E family lipoprotein releasing system, transmembrane protein |
|---|
| Protein accession | YP_001093758 |
|---|
| Protein GI | 127512561 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
|---|
| TIGRFAM ID | [TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.0000222973 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.613387 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATTTAG CGTTATCTTG GACCATAGGT TATCGGTACT GGCGAGCACG TAAGGCCAAT
CCATTTGCCT CATTTATTAC CCTGTTTGCC GTGTCGGGGA TCTTGCTCGG GGTTGCGGCC
CTGATCATAG TTAGTTCTGT GATGAATGGT CTCGAGGGAC AGCTCAAGCA GCGCATTCTC
GGCGCAGTGC CGCAGCTGAC GGTGCACTGT GAGCAGCACC TTGGCCACTG GCAAGATGTC
GCCAATACCT TAATCGATGG TAAGCAGATC CTGGCGATGA GCCCGAGCGT GGCCACCCAG
GCCATGTTAC AGTCGCCGAG CAACATCAGT GCGGTGCAGG TTTATGGTAT CTATCCCGAG
CTTGAAAAAG ACAATCTGTC CCGTCTGAAC CGTCACTTCA ATGGCTCCCT CGATAGTCTC
GAGGCGGGCA AATACCGCAT CATCATTGGC GCCGAGTTGG CGCGTCGTCT GGATGTGAAA
CCCGGCGATA AGATACGTGT ACTCAGTGGC GATGGGGTAG TCTATTCGCC GCTGGGGCCT
GTGCCGAGTC AGCGTAAGTT TATCGTAGCC GGCGTGTTTG AGATGGGATC TCAGGTAGAT
GCGAGCCTGG CTTACGTGCA TCACGAGGAT GCACTGCGTC TGATGCGCAA GTCCCCCAAT
GAGATCAAGT CGCTGCGCCT CTATCTGGCC GATCCCTTCA AGGCGAGCAA GTTGGCTTCT
AAGGTTAAAG CCGCGTTTGA GGCGGCCGGT GACAGTGTGA CCACCAGTGA TTGGCGCGAA
AACTATGGTC ATCTCTTCTC TGCGGTAAAG ATGGAGAAGA ACATGATGTC GTTGATGCTC
AGCCTGATCA TCGCCGTGGC GGCCTTTAAC ATCGTCTCGG CGCTGGTGAT GATGGTGGTG
GATAAGACCA CAGACGTTGC CGTGCTCAAG ACCCAAGGCC TGACCACGGG TAGCATCATG
GGGATCTTCA TGATCCAGGG CTCGCTCAAC GCCGTCTTAG GCCTGGTGGG CGGCCTGGCT
ATCGGCGTGC TGGCCACATT AAATATCAAT ACACTCTTCT CAATGCTCGG CATTCATGTG
CTCGGGGCGG GGCAACGTCT GCCGGTGCAG CTCGAGTGGG GCCAGTTGTC CCTGATCGTC
GTTGGCACCC TGGCCATCAC ATTTTTAGCG ACCGTTTATC CCGCACTACG GGCAGCAAGC
GTGCAACCTG CCACAGCTTT AAGGTATGAA TAA
|
|---|
| Protein sequence | MNLALSWTIG YRYWRARKAN PFASFITLFA VSGILLGVAA LIIVSSVMNG LEGQLKQRIL
GAVPQLTVHC EQHLGHWQDV ANTLIDGKQI LAMSPSVATQ AMLQSPSNIS AVQVYGIYPE
LEKDNLSRLN RHFNGSLDSL EAGKYRIIIG AELARRLDVK PGDKIRVLSG DGVVYSPLGP
VPSQRKFIVA GVFEMGSQVD ASLAYVHHED ALRLMRKSPN EIKSLRLYLA DPFKASKLAS
KVKAAFEAAG DSVTTSDWRE NYGHLFSAVK MEKNMMSLML SLIIAVAAFN IVSALVMMVV
DKTTDVAVLK TQGLTTGSIM GIFMIQGSLN AVLGLVGGLA IGVLATLNIN TLFSMLGIHV
LGAGQRLPVQ LEWGQLSLIV VGTLAITFLA TVYPALRAAS VQPATALRYE
|
|---|
| |