Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_1620 |
Symbol | |
ID | 4922061 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 1853026 |
End bp | 1853946 |
Gene Length | 921 bp |
Protein Length | 306 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 640163182 |
Product | adenosylmethionine decarboxylase |
Protein accession | YP_001093746 |
Protein GI | 127512549 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR00535] S-adenosylmethionine decarboxylase proenzyme, eukaryotic form |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.504396 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.0565321 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTATTTTG AAGGGGCGGA GAAGCGCTTA TCGCTGACGC TGGCGGCGGG TTGTCCGTCG CTTAGGGCGT TGGGCGATGC GTATTGGCGC CGCGCCCTGG CCAAGAGTGA TACAGAGATC CTCTCAAAGC TGAGCAGTGA GCAGTGCGAT GCTTACCTGC TCAGCGAATC TAGCCTGTTT GTCTGGCACG ATAGTCTGGT GCTGATCACC TGTGGCAACA CACGGCTAAT CGAGACCGTA CTTTCCCTGG TGGAGTCACT GGGTCGCGAT CAGATTGCCA GCCTGAGTTA TCAGCGTAAG AGCGAGATCT TACCCGCCTT ACAGACTAGC CGCTTCGAAG AGGATATCGC CCGGCTTGGC ACCATGCTAA GCGGCGCCGC CTACCGCATA GGCCATTTAG ATGGTCATCA CCATCATATT TTCTTCTCTG GCAGTAAGGT AAGGCTTAAA CCCGCCCAGA CGGTGCAGAT GTACCATATT CGCGGTGAGC TGGCCGATTA TCTGCTCAGC GATGGGCAAA CGATTGCGGG GATAGCCAGC CGGCTTAATT TATCTCAGCT ACTGAGCGGT TTTGATATTG ATGCGCACCT GTTCTCGCCA CTGGGTTATT CCCTCAACGC CATCAGGGGA GAAGATTATT TTACCTTGCA CATCACCCCG CAAGAGACGA GCTCCTATGT GAGCCTGGAA ACGAATTTGT CGCTCGGCGC AGGGCTTAAC GGTATAGTAG GTAAGTTGTT AAACCGCTTA AATCCGGTAA GCTGGGACTT GGCAGGATAT GAAGCCGAGA CGTTAGCATA CTGCGCCAAA CAGTATAGCC TAGAGGCCCG GGGCGAACTT GCCTTGGCGG ATGGCCAAGG CCTGTATGTA AAACACTATA AACAGCGCGA TTGTGAGCAA TTGCTGCCCG TTGCGTTGTG A
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Protein sequence | MYFEGAEKRL SLTLAAGCPS LRALGDAYWR RALAKSDTEI LSKLSSEQCD AYLLSESSLF VWHDSLVLIT CGNTRLIETV LSLVESLGRD QIASLSYQRK SEILPALQTS RFEEDIARLG TMLSGAAYRI GHLDGHHHHI FFSGSKVRLK PAQTVQMYHI RGELADYLLS DGQTIAGIAS RLNLSQLLSG FDIDAHLFSP LGYSLNAIRG EDYFTLHITP QETSSYVSLE TNLSLGAGLN GIVGKLLNRL NPVSWDLAGY EAETLAYCAK QYSLEARGEL ALADGQGLYV KHYKQRDCEQ LLPVAL
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