Gene Shew_1607 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_1607 
Symbol 
ID4921698 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp1838586 
End bp1839074 
Gene Length489 bp 
Protein Length162 aa 
Translation table11 
GC content58% 
IMG OID640163169 
Productthioesterase superfamily protein 
Protein accessionYP_001093733 
Protein GI127512536 
COG category[I] Lipid transport and metabolism 
COG ID[COG1607] Acyl-CoA hydrolase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000128786 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
GTGGCTGTGA TGGCGGGACA AGATAGAGAG ATCACCCTGC GATTTTTGGC CGAGCCGGCC 
GATGTAAACT TTGGTGGCAA GGTCCATGGT GGCGCGGTCA TGAAATGGAT CGATTTAGCC
GCCTATGCCT GCGCGGCGGG GTGGAGCGGT AAGTACTGCA TCACCGCCTA TGCAGGGGGG
ATACGTTTCG TCAAACCCAT TCATGTGGGT AATATCGTCG AGGTGGGGGC CAAGGTGATC
TATACAGGTC GCACCTCGAT GCACCTGGGG ATAGACGTGA AGGCGGGCGA TCCCAAACAT
CCAGAGCGAC ATCTTACCAC CCACTGTATC GTGATCATGG TGGCGGTGGA CGATTCTGGT
CAACCCTCCC CTGTGCCTGA ATGGATCCCC GTTACCGAGT CGGACAAGGT GATGCGCGAC
TCTGCCATCC GCCTGATGGA GATGCGCAAG AAGATCGGCG CCGAGATGGA GGCCCACCTC
AAGCCTTAG
 
Protein sequence
MAVMAGQDRE ITLRFLAEPA DVNFGGKVHG GAVMKWIDLA AYACAAGWSG KYCITAYAGG 
IRFVKPIHVG NIVEVGAKVI YTGRTSMHLG IDVKAGDPKH PERHLTTHCI VIMVAVDDSG
QPSPVPEWIP VTESDKVMRD SAIRLMEMRK KIGAEMEAHL KP