Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_1607 |
Symbol | |
ID | 4921698 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 1838586 |
End bp | 1839074 |
Gene Length | 489 bp |
Protein Length | 162 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 640163169 |
Product | thioesterase superfamily protein |
Protein accession | YP_001093733 |
Protein GI | 127512536 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1607] Acyl-CoA hydrolase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.000128786 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | GTGGCTGTGA TGGCGGGACA AGATAGAGAG ATCACCCTGC GATTTTTGGC CGAGCCGGCC GATGTAAACT TTGGTGGCAA GGTCCATGGT GGCGCGGTCA TGAAATGGAT CGATTTAGCC GCCTATGCCT GCGCGGCGGG GTGGAGCGGT AAGTACTGCA TCACCGCCTA TGCAGGGGGG ATACGTTTCG TCAAACCCAT TCATGTGGGT AATATCGTCG AGGTGGGGGC CAAGGTGATC TATACAGGTC GCACCTCGAT GCACCTGGGG ATAGACGTGA AGGCGGGCGA TCCCAAACAT CCAGAGCGAC ATCTTACCAC CCACTGTATC GTGATCATGG TGGCGGTGGA CGATTCTGGT CAACCCTCCC CTGTGCCTGA ATGGATCCCC GTTACCGAGT CGGACAAGGT GATGCGCGAC TCTGCCATCC GCCTGATGGA GATGCGCAAG AAGATCGGCG CCGAGATGGA GGCCCACCTC AAGCCTTAG
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Protein sequence | MAVMAGQDRE ITLRFLAEPA DVNFGGKVHG GAVMKWIDLA AYACAAGWSG KYCITAYAGG IRFVKPIHVG NIVEVGAKVI YTGRTSMHLG IDVKAGDPKH PERHLTTHCI VIMVAVDDSG QPSPVPEWIP VTESDKVMRD SAIRLMEMRK KIGAEMEAHL KP
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