| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1603 |
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| Symbol | |
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| ID | 4921873 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1835440 |
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| End bp | 1836186 |
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| Gene Length | 747 bp |
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| Protein Length | 248 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640163165 |
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| Product | 3-oxoacyl-(acyl-carrier-protein) reductase |
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| Protein accession | YP_001093729 |
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| Protein GI | 127512532 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | [TIGR01830] 3-oxoacyl-(acyl-carrier-protein) reductase |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0000000401343 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.000161546 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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| |
Sequence |
| Gene sequence | ATGAGTTTCA ATCTAGATTT AACCGGCAAG GTTGCCCTGG TAACTGGTGC TAGCCGTGGT
ATTGGCCGTG CGGTCGCCGA AACATTGGTT GAGGCCGGTG CGCTGGTTAT CGGCACCGCG
ACCAGCGAGC GCGGCGCAGC TGCTATCCAG GAATATCTGG GTGATAAAGG TCATGGATTA
GTATTAAATG TCACCGATAG TGAGTCAATT GACCATTTAT TTGCCTCGAT CAAAGAAAAA
GTCGGTGAAG TTGATATTCT GGTAAACAAT GCGGGTATCA CGCGCGACAA TCTCTTGATG
CGTATGAAGG AAGATGAGTG GACGGACATC ATAGATACCA ACCTGACCTC TCTCTATCGC
ACCTCAAAGC AGGTGTTACG TGCAATGATG AAGAAGCGCA GTGGCCGTAT TATTAACATT
GGCTCTGTTG TAGGCACAAT GGGCAATGCA GGTCAGACAA ACTATTGCGC AGCTAAGGCT
GGTTTGATTG GATTTACAAA ATCTCTTGCA AGAGAGGTTG CATCTCGTCA AATAACAGTG
AATGCTATTG CTCCTGGGTT TATCCAGACC GATATGACGG ATGAGCTGAC GGAAGAGCAG
CAAAAAGGTA TTATGTCACA AGTTCCTATG GAAAGACTGG GACAGCCGCA AGAGATTGCA
AATGCTGTAC TGTTTTTAGC ATCGGATTCA GCGGCTTACA TCACAGGGGA AACTCTGCAT
GTAAACGGCG GCATGTACAT GGTTTAA
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| Protein sequence | MSFNLDLTGK VALVTGASRG IGRAVAETLV EAGALVIGTA TSERGAAAIQ EYLGDKGHGL
VLNVTDSESI DHLFASIKEK VGEVDILVNN AGITRDNLLM RMKEDEWTDI IDTNLTSLYR
TSKQVLRAMM KKRSGRIINI GSVVGTMGNA GQTNYCAAKA GLIGFTKSLA REVASRQITV
NAIAPGFIQT DMTDELTEEQ QKGIMSQVPM ERLGQPQEIA NAVLFLASDS AAYITGETLH
VNGGMYMV
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