Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_1594 |
Symbol | |
ID | 4921199 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 1827362 |
End bp | 1828351 |
Gene Length | 990 bp |
Protein Length | 329 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 640163156 |
Product | RluA family pseudouridine synthase |
Protein accession | YP_001093720 |
Protein GI | 127512523 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0260553 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.0130241 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTGCAGCT TGAAAGAGAC AAGGCGTAGC ATGAACAATC AACAAGCGTT AAATAAAGTC GAACTGGTAA CGATCGACGA GGATAACCTC GGCCAGCGAA TCGATAATTT TCTGGTCACT AAACTGAAAG GCGTCCCTAA GAGCATGATC TACCGTATCG TGCGTAAGGG CGAGGTGCGC GTCAATAAGA AGCGGATCAA GCCCGAATAT AAGCTGCAAG ACGGTGATAT AGTGCGAATC CCGCCTGTTC GCGTCTCCGC AAGCGAGGAC AAGCCAGGCC CAAGTGCCAA GTTGACTAAG GTGTCGCAGC TCGAGGGGCG TATCCTGTTT GAAGACAAGG CCATCATAGT GCTTAACAAG CCCGCGGGCA TTGCGGTTCA TGGGGGCAGT GGCGTGGATT TCGGTGTGAT TGAGGCGATG CGCTCGCTCA GACCGCAGCA GAAGTTTCTC GAACTGGTTC ACCGCTTGGA TAAGGAAACC TCGGGCGTCT TGTTGATCGC CAAGAAGCGC CGCGCGCTTA AACACCTGCA CGATCAGCTG CGTTACAAGA AGATGCAGAA GGACTACATG GCCTTGGTTC GTGGAGAGTG GCAAAACCAT GACAAGGTGA TCAATGCGCC GCTGTTGAAA CTCACCCTTA AATCGGGCGA GCGTATCGTG CGGGTCAACC AGGAGGGTAA ACCCTCGGAA ACCCGTTTTA AGATAATGCA GCGTTATCAA GGTGCCACCC TGGTGCAGGC CAGTCCGGTT ACCGGACGTA CCCATCAGAT CCGTGTGCAT TGCCAGTATG CCGGTCACCC CATCGCCTGT GACGAGAAAT ACAGCGAGCA GAAGTTCGAT GATGCCATGC GCGAGTTGGG CCTCAATCGT CTCTTTCTCC ATGCCGCCCA GCTGAAATTT ACCCATCCGG TATCGGAAGA GGTGATGCAG GTGAAGGCGC CACTGGATAA GGCACTACAA GACTTGTTGA ATAAATTGGA TAAGGCATGA
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Protein sequence | MCSLKETRRS MNNQQALNKV ELVTIDEDNL GQRIDNFLVT KLKGVPKSMI YRIVRKGEVR VNKKRIKPEY KLQDGDIVRI PPVRVSASED KPGPSAKLTK VSQLEGRILF EDKAIIVLNK PAGIAVHGGS GVDFGVIEAM RSLRPQQKFL ELVHRLDKET SGVLLIAKKR RALKHLHDQL RYKKMQKDYM ALVRGEWQNH DKVINAPLLK LTLKSGERIV RVNQEGKPSE TRFKIMQRYQ GATLVQASPV TGRTHQIRVH CQYAGHPIAC DEKYSEQKFD DAMRELGLNR LFLHAAQLKF THPVSEEVMQ VKAPLDKALQ DLLNKLDKA
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