Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_1560 |
Symbol | mnmA |
ID | 4921752 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 1790570 |
End bp | 1791685 |
Gene Length | 1116 bp |
Protein Length | 371 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 640163122 |
Product | tRNA-specific 2-thiouridylase MnmA |
Protein accession | YP_001093686 |
Protein GI | 127512489 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0482] Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain |
TIGRFAM ID | [TIGR00420] tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.0000033565 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCAGCAA TCGAACCCAA TCCAAACGGT AAAAAAGTGA TCGTCGGCAT GTCCGGCGGT GTCGACTCAT CTGTTTCGGC GTATCTCCTC ATGCAACAGG GCTATCAGGT CGAAGGCCTG TTCATGAAAA ACTGGGAAGA GGACGATACC GACGAGTATT GTGCTGCCGC CGAAGATCTT AAAGATGCCC AAGCCGTTTG CGACAAACTG GGGATCAAGC TGCACACGGT TAACTTTGCC GCCGAATACT GGGACAACGT GTTCGAGTAC TTCCTCGCCG AATACAAGGC GGGCCGTACC CCTAACCCAG ACATCATGTG CAACAAAGAG ATCAAGTTTA AGGCGTTTCT CGAGTTTGCC GACGACATCC TGGACGCCGA CTACATCGCC ATGGGCCACT ATGTGCGCCG CAGCGATGCC TCGGGTCAAA GCCAGATGCT ACGTGGCGTC GATGGCAACA AAGATCAGAG CTACTTCCTC TACACCTTGA GCCATGAGCA GATCGCCCGC TCCCTGTTCC CTGTGGGTGA ACTGGAGAAG AGCGAAGTGC GTGAAATTGC CAAAGAGATG GGGCTGGTTA CCCATGACAA GAAGGACAGC ACAGGCATCT GCTTTATCGG CGAGCGTAAG TTCACCGATT TTCTGCGCAC CTTCCTGCCC GCGCAGCCTG GCAAGATAGA GACAGCCGAA GGCGAAGTCA TAGGTGAGCA CCAAGGCTTG ATGTACCACA CCCTGGGTCA GCGCAAGGGG CTTGGGATCG GCGGCATGAA GAACAGCAAC GACGATCCTT GGTATGTGGT CGATAAAGAT CTCGAACGTA ACGTGTTGGT TGTCGGTCAA GGTGGTAAGC ACCCTCGCCT CATGTCGGTG GGTTTCTACG CCGATCAGCT ACACTGGGTC GATAGAACAG GGCCTAATGA TGGCGCCAAG ATCACGGTCA AGACACGCTA CCGTCAGCAG GATGTGGCCT GTACCCTCAC CTATGAAGGG GACGATCGCA TCAAGGTGAT CTTCGACGAG CCAGTTGCCG CCGTAACCCC TGGTCAGTCG GCCGTGTTTT ATGACGGCGA AGTCTGTCTG GGCGGCGGTA TCATAGACAG TCTGATTAGA GAGTAA
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Protein sequence | MAAIEPNPNG KKVIVGMSGG VDSSVSAYLL MQQGYQVEGL FMKNWEEDDT DEYCAAAEDL KDAQAVCDKL GIKLHTVNFA AEYWDNVFEY FLAEYKAGRT PNPDIMCNKE IKFKAFLEFA DDILDADYIA MGHYVRRSDA SGQSQMLRGV DGNKDQSYFL YTLSHEQIAR SLFPVGELEK SEVREIAKEM GLVTHDKKDS TGICFIGERK FTDFLRTFLP AQPGKIETAE GEVIGEHQGL MYHTLGQRKG LGIGGMKNSN DDPWYVVDKD LERNVLVVGQ GGKHPRLMSV GFYADQLHWV DRTGPNDGAK ITVKTRYRQQ DVACTLTYEG DDRIKVIFDE PVAAVTPGQS AVFYDGEVCL GGGIIDSLIR E
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