Gene Shew_1413 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_1413 
Symbol 
ID4920822 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp1626400 
End bp1627377 
Gene Length978 bp 
Protein Length325 aa 
Translation table11 
GC content33% 
IMG OID640162954 
Producthypothetical protein 
Protein accessionYP_001093541 
Protein GI127512344 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00241819 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGTATAGAA TTAGTATCTA TAAGATAGGT TTTTTATTTC TAGCTTTAAG TCTCTGCGCT 
ATTTTGGCTT TAAGACATAT CCCTAGTTTT TATGACATCA ATGATTCTGG ACGATATGTA
GCTTGGATTG AGTCTTATTG CCTAGGGGAG GAGGGCTATT ATGAAGATAA ACTTGAAAGC
CCTTCTTATC AACTATTTTA TTCAGTGGCT ACGCTTAATT GTACGATAAC TGAGCCCCAC
ACATTTCTTT TTATCGTTGC CTTGTTTACT CCTCTTCCAT TTGTTTTGTT CAGTAGAGGA
GGGTGTGGTA ACTTCATGTG GAGTTTGACT TTTTTTTTAA GTGTCTTTAG TTTAGAGTTA
ATGACAAATG CTTTGAGGCA AAGCTTAGGT TTAATGCTTT TTATGTTTTC TCTGGCGCTT
ATAAAAAAGT CTAAACTCTT CGCTTTTGTA ATTCTAATTG TGTCAATATT TAGCCATCCT
TCTGTCGCAA TATATAGTCC GCTTTTTATA GTTATGGCAT ATAATGGTTT TGTGCTTAGA
GTGTTGCGTC ACAAGCCTTA CATGTTTTTA TTTTTTAGCT TGGTTGTTTT GTTTTTGGGG
GTTATTTCAA ATTACTCTTT GTTTTGGGGG CAGTTAAACT TCTATCAATC TATATATATG
AACTCATTGA ATTTAAGCTT TGTGCTTTAT GTGACCTTTC CGGTCTTTTT TGTGTGGTTT
ACTCGTTACG TTGTAGATTA TGAATTAGTA AGTTTCGACG AAAGGTTCTG TTTTTTTTAT
TCTTTGTTTT TAATTGTGGT TACTTTAGTT TTTTTTCCCG CAATAACTTA TAGGGTGGTT
TTTTTAACCT TTCCAATTTA TATATTTATA ATTAGTAGGG AGGGAGTGAC CAAACTGTCT
GGGTTATGCG CTTGTATTGG TTTGGTAATT CATATGTCTG TGATGATGCT GTTCTCTTCT
AATAGGATTT TATATTAA
 
Protein sequence
MYRISIYKIG FLFLALSLCA ILALRHIPSF YDINDSGRYV AWIESYCLGE EGYYEDKLES 
PSYQLFYSVA TLNCTITEPH TFLFIVALFT PLPFVLFSRG GCGNFMWSLT FFLSVFSLEL
MTNALRQSLG LMLFMFSLAL IKKSKLFAFV ILIVSIFSHP SVAIYSPLFI VMAYNGFVLR
VLRHKPYMFL FFSLVVLFLG VISNYSLFWG QLNFYQSIYM NSLNLSFVLY VTFPVFFVWF
TRYVVDYELV SFDERFCFFY SLFLIVVTLV FFPAITYRVV FLTFPIYIFI ISREGVTKLS
GLCACIGLVI HMSVMMLFSS NRILY