| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1403 |
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| Symbol | |
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| ID | 4923175 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1615774 |
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| End bp | 1616640 |
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| Gene Length | 867 bp |
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| Protein Length | 288 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 640162944 |
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| Product | dTDP-4-dehydrorhamnose reductase |
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| Protein accession | YP_001093531 |
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| Protein GI | 127512334 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1091] dTDP-4-dehydrorhamnose reductase |
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| TIGRFAM ID | [TIGR01214] dTDP-4-dehydrorhamnose reductase |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.00211248 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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| |
Sequence |
| Gene sequence | ATGAAAGTGT TAGTTACAGG ATGCAATGGG CAAGTTGGTC ATTGTTTAGT TGAACAATTA
CAAGGTAAGG CTGAAATCTT AGCTGTAGAT GCACAAGAGT TAGATATTAC TCAACAGCAA
GCGGTTAACG ATGTAGTTAA TAAATTTATA CCTGATGTAA TTATCAATGC TGCTGCCCAT
ACGGCTGTTG ATCGAGCTGA AACAGAGCAA GAACAGTCGT ATAAAGTGAA TTGTGATGGG
CCGAAGTATT TGGCGCAAGC AGCACAATCC ATTGGGGCAT CAATCTTACA TATATCGACA
GATTATGTAT TTGAAGGCAA TAAAGATGGC TTATATAACG AAGAGGATGT AACAAACCCT
CAAGGTGTAT ATGGCGCAAG TAAATTAGCG GGAGAGCAGG CTGTTATACA AGCGTGTGAA
AAACACATCA TCCTTCGAAC TGCTTGGGTA TTTGGTCAGC ATGGAAATAA TTTTGTTAAA
ACTATGCTTC GTTTAGGGCA AGAACGCGAT TCATTAAGTA TTGTTGGAGA TCAGTTTGGT
GGACCAACCT ATGCCGCTGA TATAGCCGTG GCATTAATCC ATATCGCACA ACAGGCGCAT
GCCGGAAAAA ATGCTTGGGG AGTTTATCAT TTCTCAGGTA TGCCTCATGT AAATTGGTAT
CAATTTGCTG ACGCAATTTT TACTAAAGCT GTTGAGCAAA ATATATTGGA AAAAGCACCA
ACTTTAACAT CTATCTCTAC TCTCCAATAT CCAACACCAG CGAAAAGACC GACTAATTCA
AAGCTGGATT GTCACAAGAT AAAAAGTATT TTTGGCATTT TACCAAGTGA CTGGGTAAAA
GCATTAACCG AAATTAAAGA ATATTAA
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| Protein sequence | MKVLVTGCNG QVGHCLVEQL QGKAEILAVD AQELDITQQQ AVNDVVNKFI PDVIINAAAH
TAVDRAETEQ EQSYKVNCDG PKYLAQAAQS IGASILHIST DYVFEGNKDG LYNEEDVTNP
QGVYGASKLA GEQAVIQACE KHIILRTAWV FGQHGNNFVK TMLRLGQERD SLSIVGDQFG
GPTYAADIAV ALIHIAQQAH AGKNAWGVYH FSGMPHVNWY QFADAIFTKA VEQNILEKAP
TLTSISTLQY PTPAKRPTNS KLDCHKIKSI FGILPSDWVK ALTEIKEY
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