Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_1385 |
Symbol | |
ID | 4921811 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 1593892 |
End bp | 1594629 |
Gene Length | 738 bp |
Protein Length | 245 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 640162926 |
Product | chemotaxis phosphatase, CheZ |
Protein accession | YP_001093513 |
Protein GI | 127512316 |
COG category | [N] Cell motility [T] Signal transduction mechanisms |
COG ID | [COG3143] Chemotaxis protein |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.00582364 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.177515 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCAGGCAG AAACTTCAGG GCTGATCAAT CTAGCACAGG CCAAGCAACT CGTTGATCTG CTAGAGGCGG GTCAACAAGA GATGGCCGAT GAGCTAATTC GCGATATCGC CAGCCCGATT CAGAAAGAGC TGTTTGACGA GGTGGGTCGC CTAACCCGTC AGCTTCACAG TGCCATAGTG GACTTTCAGG TGGACGGTCG TCTCGTGGAG CTGGCCAATA GCGAAATTCC CGATGCCAAA GAGCGCCTCA ATTATGTCAT CGACATGACG GAGCAGGCCG CCAATAAAAC CATGGACGCC GTCGAAGAGT CTCTGCCTCT TGCAGATGCC CTTACCATGA ACGTACAGGC CGTTAAGCCT TCTTGGGATC GCCTGATGCG TCGCGATATT CAGCTGCACG AATTTAAGGC GCTCTGCCAT GATGTTCAGC AGTTTATCGA GCGCAGCGAA TCCGATTCCA ATCGTTTAAA AGAGTTACTC AACAACATAT TGCTGGCCCA GGACTTCCAA GATCTGACCG GACAGATGAT CCGCCGGGTG ATCGAGCTGG TGCGAGAGGT TGAGAGTAAC CTGGTCTCTA TGTTGACCGT ATTTGGCGAG CAGCCCGCCA CGGATAAACC CCGTGCATCA GAGAAGTGTG TCGAAGCTGA AGGTCCTATT ATGAACGCTG ATCAGCGTGA TGATGTCGTG ACAGGGCAAG ATGAAGTCGA TGACTTGCTG TCGAGTCTAG GTTTCTAA
|
Protein sequence | MQAETSGLIN LAQAKQLVDL LEAGQQEMAD ELIRDIASPI QKELFDEVGR LTRQLHSAIV DFQVDGRLVE LANSEIPDAK ERLNYVIDMT EQAANKTMDA VEESLPLADA LTMNVQAVKP SWDRLMRRDI QLHEFKALCH DVQQFIERSE SDSNRLKELL NNILLAQDFQ DLTGQMIRRV IELVREVESN LVSMLTVFGE QPATDKPRAS EKCVEAEGPI MNADQRDDVV TGQDEVDDLL SSLGF
|
| |