| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1380 |
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| Symbol | flhA |
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| ID | 4923611 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1588319 |
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| End bp | 1590418 |
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| Gene Length | 2100 bp |
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| Protein Length | 699 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640162921 |
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| Product | flagellar biosynthesis protein FlhA |
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| Protein accession | YP_001093508 |
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| Protein GI | 127512311 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1298] Flagellar biosynthesis pathway, component FlhA |
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| TIGRFAM ID | [TIGR01398] flagellar biosynthesis protein FlhA |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.329367 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATTTGA AAGCAACGCT CGGTCAGATA AAACAGGTAA AACCCGCCAA TTTTAAAGGG
ATAGGTACGC CCATATTGGT GCTTGCGGCG CTGGCGATGA TCGTCTTGCC CATGCCGGCC
TTCCTGTTGG ATATCCTGTT TTCTTTTAAT ATCGCCTTGG CCCTGGTGGT CTTGCTGGTG
GCCATCTATA CCGACCGCCC CCTGGATTTT GCTGCCTTTC CCACAGTGCT GCTGGTTGCT
ACCTTGCTGC GTTTGGCGCT TAACGTCGCC TCGACCCGTA TCGTCTTACT CGAGGGGCAC
AACGGTGGCG ACGCCGCCGG TAAGGTGATT GAGGCCTTCG GCTCAGTGGT GATTGGCGGT
AACTATGCCG TGGGTCTGGT GGTGTTTCTT ATCCTGATCA TCATCAACTT CGCCGTGGTA
ACCAAGGGCG CCGGACGTAT CTCAGAGGTG AGCGCTCGCT TCACACTAGA TGCCATGCCA
GGTAAGCAGA TGGCAATCGA CGCCGACCTT AACGCCGGGA TCCTTAATCA AGATCAGGCG
CGTATTCGCC GCGCCGAAGT AACCAAGGAG GCCGACTTCT ATGGTGCGAT GGATGGTGCC
TCCAAGTTTG TAAAAGGCGA TGCCATCGCC GGTATCATGA TTCTGGTGAT CAACATCCTG
GGCGGTTTCG TCATAGGTAT GGCCCAGCAT GGGCTGGACT TCTCCTCTGC GGTTGAGATC
TACACCCTAT TGACTATCGG TGATGGCCTG GTGGCGCAGA TCCCTGGTCT CTTGCTCTCC
ATCGCGGCGG CCTTGATGGT GACCCGTCAA AACGAATCTG GCGACATGGG ACAGATGGTT
ATGAGCCAGA TGTTCGACAA CCCTAAGTCG CTGGCCATCG CCGCCGGCGT CCTGCTGACC
ATGGGCATAG TGCCTGGCAT GCCGCATTTC GCTTTTCTCA GCTTTGGCCT GATCACCGCG
GGTGGTGCCT ATTTTCTGCA TCGTAAGAAA GATCTCGACA GACAACGTGC CTTGGAGATC
GCCAAGTCCT CACCAGCGAC TCCCGGCGAT GCCAAGCCCA AAGAGCTTAG CTGGGATGAT
GTGCAGCAGG TGGACACCAT TGGTCTGGAG GTGGGCTATC GTCTGATCCC GCTGGTGGAT
AAGGGCCAGG GTGGTGAGCT GCTTGGACGT ATCAAGGGCG TGCGTAAGAA GCTCTCTCAA
GAGCTGGGCT TTCTTGTTCC CGCCGTGCAT ATTCGCGATA ACCTGGATCT GGCGCCAAAC
ACCTATAGGA TCTCCCTGAT GGGTGTGGCC TCAGGTGAGG CGGATATTCG TCACGATTGT
GAACTGGCCA TCAACCCAGG TCAGGTTTAC GGCAAACTAG ATGGTGTCGA GACCACAGAT
CCCGCATTTG GTTTAGAGGC GGTATGGATC GCCCCTGAGC TCAGAGAACA TGCTCAGACT
CTAGGTTATA CCGTGGTGGA TGCCGCTACC GTAGTGGCGA CTCACCTGAG TCAGCTGTTA
ACCAATAACG CCTCCAAGCT GCTGGGCTAC GAAGAGGTGC AGCAGCTGAT GGATATGCTG
GCCAAGCATT CGCCTAAGCT GGTCAGTGGT TTCATTCCCG ATGTCTTGCC GCTGGGCACT
GTGGTCAAGG TGATGCAGAA CCTGCTTAAC GAAGGCGTGT CGATCCGCGA CCTTAAGACC
ATAGTTCAGA CTCTGCTCGA GTACGGGCCT AAGAGTAACG ATACCGAGGT GCTTACCGCT
GCTGTACGTA TTGCACTTAA ACGCATGATT GTTCAAGAAA TAAGCGGTCC AGAGCCGGAA
ATTCCTGTCA TTACTTTGGC GCCCGAATTG GAACAGATGT TGCATCAGTC TATGCAGGCA
ACGGGAGGCG AGGGGCCGAA TATCGAACCT AGCCTTGCCG AGAGGATGCA AAAGTCGTTA
CTCGACGCAT CCCAGCGTCA GGAGATGGTG GGCCAACCAG CCATCCTACT GACATCGGGT
ATGTTACGTT CGACGCTGTC GCGTTTTGTT AAACATACGA TTCCAAATCT GCGGGTGATC
TCTTACCAAG AGGTACCCGA TGAGAAACAA ATTCGCATCG TATCAGCGGT CGGCCAGTAG
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| Protein sequence | MDLKATLGQI KQVKPANFKG IGTPILVLAA LAMIVLPMPA FLLDILFSFN IALALVVLLV
AIYTDRPLDF AAFPTVLLVA TLLRLALNVA STRIVLLEGH NGGDAAGKVI EAFGSVVIGG
NYAVGLVVFL ILIIINFAVV TKGAGRISEV SARFTLDAMP GKQMAIDADL NAGILNQDQA
RIRRAEVTKE ADFYGAMDGA SKFVKGDAIA GIMILVINIL GGFVIGMAQH GLDFSSAVEI
YTLLTIGDGL VAQIPGLLLS IAAALMVTRQ NESGDMGQMV MSQMFDNPKS LAIAAGVLLT
MGIVPGMPHF AFLSFGLITA GGAYFLHRKK DLDRQRALEI AKSSPATPGD AKPKELSWDD
VQQVDTIGLE VGYRLIPLVD KGQGGELLGR IKGVRKKLSQ ELGFLVPAVH IRDNLDLAPN
TYRISLMGVA SGEADIRHDC ELAINPGQVY GKLDGVETTD PAFGLEAVWI APELREHAQT
LGYTVVDAAT VVATHLSQLL TNNASKLLGY EEVQQLMDML AKHSPKLVSG FIPDVLPLGT
VVKVMQNLLN EGVSIRDLKT IVQTLLEYGP KSNDTEVLTA AVRIALKRMI VQEISGPEPE
IPVITLAPEL EQMLHQSMQA TGGEGPNIEP SLAERMQKSL LDASQRQEMV GQPAILLTSG
MLRSTLSRFV KHTIPNLRVI SYQEVPDEKQ IRIVSAVGQ
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