Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_1378 |
Symbol | fliR |
ID | 4922893 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 1586236 |
End bp | 1587033 |
Gene Length | 798 bp |
Protein Length | 265 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 640162919 |
Product | flagellar biosynthesis protein FliR |
Protein accession | YP_001093506 |
Protein GI | 127512309 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1684] Flagellar biosynthesis pathway, component FliR |
TIGRFAM ID | [TIGR01400] flagellar biosynthetic protein FliR |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.720864 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.279429 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAGATCT TGCTATCGAC TATCATGCAG ACGCTGTCGG CCTATATGTG GCCGCTGTTT CGAGTGTCGA GCATGTTGAT GGTGATGGCG GTATTTGGCG CCAATACCAC ACCGACCCGT GTGCGCCTGC TGCTTTCGGT GGCGATCACC TTCGCCATCG CCCCCATGTT GCCGGTCAAT ACCGAGGTCG AGCTATTTTC ATTAGGCGCC GTGTTCGTGA CCGTGCAGCA GATCTTGATT GGCGTTGCCA TGGGGTTTGT CACCTTGCTT ATCATGCAGA CCTTCGTGTT GACCGGACAG ATCATCGGCA TGCAGACCAG CTTAGGTTTC GCCTCCATGG TGGACCCCGG CTCAGGCCAG CAGACCCCGG TTATCGGTAA CTTCTTCTTG CTGCTGACGA CCATGATCTT CTTGGCGGTG GATGGTCATC TGGTGATGAT CCGCATGTTG GTGGCCAGCT TCGATACCAT TCCCGTGTCC ATGCAAGGAA TAAGCATCGC TAGCTATCGG CGTCTGGCGG AGTGGGGCGC CTATATGTTC GGTGCGGCGC TGACCATGTC CATCTCGGCG ATTGTGGCGC TCTTGCTGAT CAACCTCTCT TTCGGGGTGA TGACCCGCGC CTCGCCGCAG CTTAACATCT TCGCCATCGG TTTCCCCGTG ACCATGGTGA GTGGTTTGAT TATTCTCTGG TTGACCTTGA CGCCTATTAT GGCGCATTTC GACGAGGTCT GGCGTTCGGC CCAGTTGTTG CTGTGCGATC TGGTGCAGCT GCAATGTAGC ACTGCTGGGA GCTTCTGA
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Protein sequence | MEILLSTIMQ TLSAYMWPLF RVSSMLMVMA VFGANTTPTR VRLLLSVAIT FAIAPMLPVN TEVELFSLGA VFVTVQQILI GVAMGFVTLL IMQTFVLTGQ IIGMQTSLGF ASMVDPGSGQ QTPVIGNFFL LLTTMIFLAV DGHLVMIRML VASFDTIPVS MQGISIASYR RLAEWGAYMF GAALTMSISA IVALLLINLS FGVMTRASPQ LNIFAIGFPV TMVSGLIILW LTLTPIMAHF DEVWRSAQLL LCDLVQLQCS TAGSF
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