Gene Shew_1346 details

Gene Information

• Locus tag: Shew_1346
• Symbol: flgC
• ID: 4920518
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella loihica PV-4
• Kingdom: Bacteria
• Replicon accession: NC_009092
• Strand: +
• Start bp: 1555092
• End bp: 1555511
• Gene Length: 420 bp
• Protein Length: 139 aa
• Translation table: 11
• GC content: 51%
• IMG OID: 640162887
• Product: flagellar basal body rod protein FlgC
• Protein accession: YP_001093474
• Protein GI: 127512277
• COG category: [N] Cell motility
• COG ID: [COG1558] Flagellar basal body rod protein
• TIGRFAM ID: [TIGR01395] flagellar basal-body rod protein FlgC; [TIGR01396] flagellar basal-body rod protein FlgB

Plasmid Coverage information

• Num covering plasmid clones: 19
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 19
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAGCCTTT TTAATATCTT CAATGTGGCA GGCTCTGGCA TGTCGGCCCA GTCGGTCAGG 
CTAAATACCA CTGCCAGTAA CATCGCTAAT GCCGATTCAG TCTCCAGCAG TGTGGATAAG 
ACCTATCGCG CCCGCCATCC GGTTTTCGAG GCCGAGCTGG CCAAGGCCAG TCATCAGCAG 
AATACCAGCC AGGCGGTCAA GGTGGCCGGT ATTGTCGAGA GCGATAAGCC GTTACAGAAA 
GAGTATTCAC CCGATCATCC GTTAGCGGAT GCCGATGGGT TTATTTATAA GCCAAATGTC 
AATGTGATGG AGGAGATGGC CAACATGATC TCGGCCTCTC GTTCCTACCA GATGAACGTA 
CAGGTTGCCG ATGCGGCAAA ATCTATGCTT CAGCAAACCT TACGCATTGG CAATTCCTAG 

 

Protein sequence

MSLFNIFNVA GSGMSAQSVR LNTTASNIAN ADSVSSSVDK TYRARHPVFE AELAKASHQQ 
NTSQAVKVAG IVESDKPLQK EYSPDHPLAD ADGFIYKPNV NVMEEMANMI SASRSYQMNV 
QVADAAKSML QQTLRIGNS