| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1300 |
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| Symbol | |
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| ID | 4920419 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 1502607 |
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| End bp | 1504037 |
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| Gene Length | 1431 bp |
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| Protein Length | 476 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640162841 |
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| Product | putative transglycosylase |
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| Protein accession | YP_001093429 |
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| Protein GI | 127512232 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4623] Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0000125661 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGAAGTT TCCTGCTGAT TCTATTCTGT GTATCGCTAC TGACAGGCTG TCAGGGCGAG
CGCGTGGACG CAGCAAAAGC AGTTGAAACC CAGCCGAAAA CCCAGCTCAA CGTGGGTACC
CTTTACGGCG CGCAGATCTA TGTCACCACG GGTCAAGGCC TCGCAGGCTT TGACTATGAG
ATGGCCGAGC GTTTCGCCAA GCATCAGGGG CTCACGCTCA ACATGCAGCC CTACCCCACC
ATCAGCGATC TCTACCAGGC GATGCGAAAT GGTGAGATAG ACCTGATCGC CGCCGGGCTG
GCCGACACCC AGAGCCGCAG GGAGCAGTTC AGGCTGGGGC CGCCGCTCTA CTATGTTAAT
CAGGTGCTGG TCTACAAACA GGGGGCCAAG TACCCAACGG ATGTGAGTCA GTTGGATGAC
AACATTACCG TGATCTCAGA CTCCTCCTTT ATCGAGACCC TGGCGGAGAT GCAAAAGCTC
TACCCTGAGC TGGTATGGGA TCAACAGTGG GATAAGGACA GCGAAGAGCT GCTGGCGATG
ATCGCCCGCG ACGAGATTAG CTACACCATA GCCGATTCGA CCACCTTCGA GATCAACCGC
CGCTATATGC CTGAGCTCAG GGCCGGTCCT GTGCTGCGTG AGGGACAGGC CGTGGTCTGG
CTGCTGCCGC CCAATGGCAG CGATCAGCTG ATGAGTGACC TGCTAAGCTT CTGGCATCAG
GAAAAAAGAG CCGGCACCCT GGCCCACCTG AACGAAAAAT ATTTCGCCCA TGTGAAGCGC
TTCGACTATG TGGACACCCG CGCCTTCCTG CGCGCCATAG ATAGTCGGCT GCCCAAGTAC
CGCGACAACT TCGTCGAATA TGCCGGCGAT CTCGACTGGC GTAAGCTAGC GGCCACCGCC
TATCAGGAGT CCCATTGGAA CCCCAATGCC CGTTCGCCCA CCGGCGTGCG CGGCATGATG
ATGCTCACCC TGCCCACGGC CAAGCAGATG GGGATCGACA ACCGTCTCGA CCCTGAGCAG
AGCATACGCG GCGGCGCCAA ATACCTGAGC GACATACTCA ATCGCCTGCC TGAGTCGATT
CCGGAAAATC AGCGCATGTG GTTTGCCCTG GCCTCCTACA ACATAGGCTA TGGCCATGTG
GAAGATGCCC GCAAGCTGGC ACAATCTATG GGGCTTAACC CCAGTGCCTG GCGCGATCTG
AAGAAGGTAT TGCCCCTGCT GCAGAAGCGT AAATACTACA AGCAGACCCG CTACGGTTAT
GCCCGCGGCA GCGAGGCGGT TCACTACGTG GATAACATCA GGCGCTACTA CGACACCTTG
GTATGGATTG ACAATCAGAA TCAACAACTA CAAGATGAGG TGATGGAAGC GCAACAACAA
ACGGCGGAAA AACAATCACA AAGCGAGATT TCCGCCGCGC AGCCCAACTA G
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| Protein sequence | MRSFLLILFC VSLLTGCQGE RVDAAKAVET QPKTQLNVGT LYGAQIYVTT GQGLAGFDYE
MAERFAKHQG LTLNMQPYPT ISDLYQAMRN GEIDLIAAGL ADTQSRREQF RLGPPLYYVN
QVLVYKQGAK YPTDVSQLDD NITVISDSSF IETLAEMQKL YPELVWDQQW DKDSEELLAM
IARDEISYTI ADSTTFEINR RYMPELRAGP VLREGQAVVW LLPPNGSDQL MSDLLSFWHQ
EKRAGTLAHL NEKYFAHVKR FDYVDTRAFL RAIDSRLPKY RDNFVEYAGD LDWRKLAATA
YQESHWNPNA RSPTGVRGMM MLTLPTAKQM GIDNRLDPEQ SIRGGAKYLS DILNRLPESI
PENQRMWFAL ASYNIGYGHV EDARKLAQSM GLNPSAWRDL KKVLPLLQKR KYYKQTRYGY
ARGSEAVHYV DNIRRYYDTL VWIDNQNQQL QDEVMEAQQQ TAEKQSQSEI SAAQPN
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