| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1296 |
|---|
| Symbol | xseA |
|---|
| ID | 4920612 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 1497096 |
|---|
| End bp | 1498424 |
|---|
| Gene Length | 1329 bp |
|---|
| Protein Length | 442 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640162837 |
|---|
| Product | exodeoxyribonuclease VII large subunit |
|---|
| Protein accession | YP_001093425 |
|---|
| Protein GI | 127512228 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1570] Exonuclease VII, large subunit |
|---|
| TIGRFAM ID | [TIGR00237] exodeoxyribonuclease VII, large subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0430502 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATGC CGAAAAATAA TGTTTACACC GTGTCGCGCC TCAACGGAGA AGTGAGGCAA
TTACTCGAAG GTGAACTGGG TAAAGTCTGG CTCGAAGCAG AAATATCCAA TTTTTCGGCG
CCCAGCTCGG GCCACTGGTA TCTCACCCTC AAAGACAATT ACGCCCAAAT CCGCGCCGCC
ATGTTTAAGG GCCGCAATCG CGCCGTCACC TTCCGTCCGG CCAATGGCCA GCAGGTGTTG
GTCAAGGGCG CCATCAGCGT CTATGAGCCC AGGGGCGACT ATCAGCTGAT CATCGACTCC
ATGCTCCCCG CCGGCGATGG CCTGCTGGCT CAGCAATATG AAGCCCTCAA GATGAAGCTG
GCCGCCGAAG GCCTGTTTGC CGCCGACACC AAGCGGCCGT TGCCGAGCAA CATTCAACGC
ATAGGGGTGG TCACCTCTGC AACCGGCGCG GCCATCAGAG ACGTGCTGCA TGTTCTCAAG
AGACGCGACC CCTCTATCGA GGTGATCATC TATCCGAGCC AGGTACAGGG AGAGCACGCC
GACAAATCCC TGTGTCATGC CATCATGCAG GCCAACGACA GGATGGAAGT GGATGTGCTA
CTGCTCACCC GCGGCGGCGG ATCACTGGAA GACCTCTGGT GTTTCAACAG CGAAGCCCTG
GCCCATACCA TCTATAACAG CGCATTGCCC GTGGTTTCGG CGGTGGGCCA TGAGGTGGAT
ACCACCATCA GCGACTATGT CGCCGACCTG CGTGCCCCTA CCCCTTCGGC GGCGGCCGAG
CTGCTATCCC AGGATGCGCT CAGCAAGGCC GACAAACTCA GGATGACCAT GACACGCCTC
AAGCAGGGCT GGCAACACTA TGGCCTGAAA CAGGCACAGC GTTTCAGCCA GCTACACCAC
AGGTTGGAGC GTCAGGATCC CAAGCGTCGC CTGCAGCAAT ATGAGCAGCG CTTCGACGAG
CTGCAACTCA GGCTCGGCGC CGCCTTAACC GGTAAGCTGC ACCAGATGGA GCGCCGTCAA
CAATCCCTGC ACGCCAGATT AAACCAGGTC TCTCCCAGCC ATCAGCTCGC CTTGGCCGCC
AGCCGTCTGA CCCATCAGAA CCAAAGATTA CACAGCGCCA TGCAGGCAAG GCTCAACTCG
GCAGAAAAGT CGCTGCAATA TGCCGCCCAT CAACTTGAGA CGGTCAGCCC ACTGGCGACC
CTGAGCCGTG GCTACAGCAT CACCCTAGAC ACCGAGGGCA AGGTGCTGCA CAGCGCGCAA
GATGTCCGCA CCGGCGCTCG CCTCACCACT AAGCTGGTCG ATGGCGAGGT GCAATCTACC
GTGATTTAA
|
|---|
| Protein sequence | MKMPKNNVYT VSRLNGEVRQ LLEGELGKVW LEAEISNFSA PSSGHWYLTL KDNYAQIRAA
MFKGRNRAVT FRPANGQQVL VKGAISVYEP RGDYQLIIDS MLPAGDGLLA QQYEALKMKL
AAEGLFAADT KRPLPSNIQR IGVVTSATGA AIRDVLHVLK RRDPSIEVII YPSQVQGEHA
DKSLCHAIMQ ANDRMEVDVL LLTRGGGSLE DLWCFNSEAL AHTIYNSALP VVSAVGHEVD
TTISDYVADL RAPTPSAAAE LLSQDALSKA DKLRMTMTRL KQGWQHYGLK QAQRFSQLHH
RLERQDPKRR LQQYEQRFDE LQLRLGAALT GKLHQMERRQ QSLHARLNQV SPSHQLALAA
SRLTHQNQRL HSAMQARLNS AEKSLQYAAH QLETVSPLAT LSRGYSITLD TEGKVLHSAQ
DVRTGARLTT KLVDGEVQST VI
|
|---|
| |