| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1201 |
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| Symbol | rumA |
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| ID | 4922039 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1393859 |
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| End bp | 1395193 |
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| Gene Length | 1335 bp |
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| Protein Length | 444 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640162735 |
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| Product | 23S rRNA 5-methyluridine methyltransferase |
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| Protein accession | YP_001093330 |
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| Protein GI | 127512133 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0455461 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCACAAT TTTATAAAGC TAAACCCCGC AAGACACAAC AAACCCAGGC TAAGCAAAGT
TTCCATGTTA GCCAGTTGGA TCATCTGGGG GCGGGGATAG CAGAACATCA GGGAAAAATC
GTCTTTATTC CCGGCGCCCT GCCGGATGAA ACGGTCACCG CGCAGATCGT CGAGCAGAAG
AAGCGTCATG CCAAGGCCAA GCTGATTAAG GTAGAGAGCG CCAGCGCCGC GCGTATAGAA
GCTAGCTGCC CTTACTATGG TCGCTGCGGC GGCTGTGACC TGCAGCATCT TGAGCTTTCT
GCCCAGCGTG ATGCCAAGCA GACGGCGCTG GAGAACCTGA TCAACAAGAT GGGCCGCACC
CAGCCTCAGA CCATGAGCGA GCCGCTAAGC GGCGAAGGCT GGCATTATCG TCGCCGCGCC
CGACTGGCGA CTCAGTACCT GCGTGATACA AAGCAGCTCA ACCTGGGTTT TCGCGCCCTG
GCCAGTAGCG AGGTGGTCAA TATCGACGCC TGCCCTGTGT TGGCAAAATC ATTGTCTGAG
CTTATCGCGC CGTTGAATCA ATGCCTCAAT CGCCTCAGTG CCAAGCGTAG CCTTGGCCAT
GTGGAGCTGT TGTCGGTAGA TTCTGGCCCA TGCGTGGTGC TACGTATCAC CAGTCCCCTG
AACGACAAAG ATAAGGCCCT GCTAGCTACA TTTGGCGAGC AGCATAAGGT GAGGCTTGTC
TTACTCGATG ATGACAGCAA ACTTGAGACC CTCTGGGGGG ATGAGGGCCT GCCCTACTAT
ACCCTGGAAG ATGGCAGTTC GCTCGGTTTC TCGCCGGGCA ACTTCATTCA GGTAAACGGC
GAGATCAATC AGCAGATGGT GACTCAGGCG ATCGACTGGC TACAGATTCA GCCGGGCGAG
CGGGTGCTGG ATCTCTTCTG CGGTGTAGGT AACTTTACCC TGCCGCTGGC CAAGGCGGGC
GCCCAGGTAG TGGGCGTCGA AGGGGTCGAT GCCATGGTGG CGCAGGCAAG AGTCAATGCG
ACCATGAGCG GCGTCGAGGG GGCCGAGTTC TATCACGGCG ACCTGAGCGC AGATCTCTCC
GCTGCCCCCT GGCTTGGCCG CATCGACAAG TTACTGCTGG ATCCTGCCAG AGCCGGCGCC
TATGAGAGTC TACAATGGTT AAAGAAGATG AAGCCCAAGG CGATTGTCTA TATCTCCTGT
AATCCTGTGA GTCTGGCCAG AGATTGTGAG CCGCTGCTGG CACAGGGTTA TCAGCTTAGT
CGCCTGGGAC TCATCGATAT GTTCCCTCAG ACCCATCACA TCGAGGCCAT GGCCTTGTTT
GAGTTGGAGA AATAG
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| Protein sequence | MAQFYKAKPR KTQQTQAKQS FHVSQLDHLG AGIAEHQGKI VFIPGALPDE TVTAQIVEQK
KRHAKAKLIK VESASAARIE ASCPYYGRCG GCDLQHLELS AQRDAKQTAL ENLINKMGRT
QPQTMSEPLS GEGWHYRRRA RLATQYLRDT KQLNLGFRAL ASSEVVNIDA CPVLAKSLSE
LIAPLNQCLN RLSAKRSLGH VELLSVDSGP CVVLRITSPL NDKDKALLAT FGEQHKVRLV
LLDDDSKLET LWGDEGLPYY TLEDGSSLGF SPGNFIQVNG EINQQMVTQA IDWLQIQPGE
RVLDLFCGVG NFTLPLAKAG AQVVGVEGVD AMVAQARVNA TMSGVEGAEF YHGDLSADLS
AAPWLGRIDK LLLDPARAGA YESLQWLKKM KPKAIVYISC NPVSLARDCE PLLAQGYQLS
RLGLIDMFPQ THHIEAMALF ELEK
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