Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_1189 |
Symbol | |
ID | 4920973 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 1381435 |
End bp | 1382538 |
Gene Length | 1104 bp |
Protein Length | 367 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 640162723 |
Product | 3,4-dihydroxy-2-butanone 4-phosphate synthase |
Protein accession | YP_001093318 |
Protein GI | 127512121 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0108] 3,4-dihydroxy-2-butanone 4-phosphate synthase [COG0807] GTP cyclohydrolase II |
TIGRFAM ID | [TIGR00506] 3,4-dihydroxy-2-butanone 4-phosphate synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.000541261 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.940375 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCACTAC ACAGCATAGA AGCGATTATC GAAGATATCC GTCTGGGTAA GATGGTTATC TTGATGGATG ACGAAGACAG AGAGAATGAA GGCGACCTGA TCATGGCCGC TAACCTAGTG ACGCCCGAGG CGATCAACTT CATGGCCACC TATGGCCGTG GCCTCATCTG TCAGACCATG ACCAAGGCGC GCTGCGAGCA GCTCAACCTG CCGCTGATGG TGAGCAACAA CAATGCCCAG TTCTCCACCA ACTTCACCGT GTCTATCGAG GCGGCCGAAG GGGTGACCAC TGGTATCTCG GCCTATGACA GAGCCGTTAC CGTACAGGCC GCCGTGGCCC GTGACGCCAA GCCGTCGGAT ATCGTGCAGC CAGGTCACAT CTTCCCACTG ATGGCCCAAG AGGGCGGGGT GCTGATCCGC GCCGGTCATA CCGAGGCGGG TTGCGACCTG GCCCGTCTGG CAGGCCATGA GCCGTCGGCG GTGATTGTCG AGATCCTCAA CGAAGATGGC ACCATGGCGC GTCGTCCAGA TCTTGAGGTG TTTGCCGAGA AGCATGGCCT CAAGATAGGC ACCATCGCCG ATCTCATCGA ATACCGTAAC ACCAAGGAAA CGACAGTGGT GCGCGAGGCC AAGTGCAAGC TGCCGACCCG TTTCGGCGAG TTCAACATGA TCACCTACCG CGACACCATA GATAACCAAT TGCATTATGT GCTGGTGAAG GGTGAAGTTC AGGCTAACGC TATGGTGCGT GTGCACCTGC AAAACACCTT CAATGATCTG CTGCACTCTG AGCGCGATGA GAAGCGTAGC TGGCCGCTGG AAAAAGCCAT GGCGCGTATC GCCGATGAAG GCGGCGTCTT GGTGGTGCTG GGTCATCAGC AGAGCAACGA AGAGTTGGTG GCCAAGGTGA AGGCCTTCGA GGCGGAAGAC AAGGGGGAAG TCGGCGCACC GGCGCAGTGG CAAGGCACCT CACGTCAGGT GGGTGTGGGC TCGCAGATCC TGGCCGATGT GGGCGTGACC AGCATGCGTC TGCTCAGCTC GCCTAAACGT TACCATTCGC TGTCGGGTTT CGGCTTGGAA GTAACTGAAT ACATTGCAGA ATAA
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Protein sequence | MALHSIEAII EDIRLGKMVI LMDDEDRENE GDLIMAANLV TPEAINFMAT YGRGLICQTM TKARCEQLNL PLMVSNNNAQ FSTNFTVSIE AAEGVTTGIS AYDRAVTVQA AVARDAKPSD IVQPGHIFPL MAQEGGVLIR AGHTEAGCDL ARLAGHEPSA VIVEILNEDG TMARRPDLEV FAEKHGLKIG TIADLIEYRN TKETTVVREA KCKLPTRFGE FNMITYRDTI DNQLHYVLVK GEVQANAMVR VHLQNTFNDL LHSERDEKRS WPLEKAMARI ADEGGVLVVL GHQQSNEELV AKVKAFEAED KGEVGAPAQW QGTSRQVGVG SQILADVGVT SMRLLSSPKR YHSLSGFGLE VTEYIAE
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