| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1188 |
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| Symbol | |
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| ID | 4924142 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1380687 |
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| End bp | 1381352 |
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| Gene Length | 666 bp |
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| Protein Length | 221 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640162722 |
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| Product | riboflavin synthase subunit alpha |
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| Protein accession | YP_001093317 |
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| Protein GI | 127512120 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0307] Riboflavin synthase alpha chain |
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| TIGRFAM ID | [TIGR00187] riboflavin synthase, alpha subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0484679 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.881373 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTTTACTG GGATCATCGA GGCTGTTGGC AGCCTGAGAA AAATTGAGCG TCGCGGCGAT
GATATTCGCC TGACGGTGGC TAGCGGCAAG CTGGACTTAA GTGACGTCAA ACTCGGTGAC
AGTATCGCCA CCAATGGCGT GTGTCTGACC GTGGTCGAGC AGATGGCCGA CGGCTATGTG
GCCGATATCT CAGCCGAGAC CGTGGCCCTT ACCGGCTTTG CCCATTATCA GGTGGGACAG
AAAGTCAACC TGGAAAAGGC GGTGACGCCG ACGACCCGCC TCGGCGGTCA TATGGTGAGC
GGTCACGTCG ATGGCGTGGC TAGCGTGGAT GACAGACAGT ATCGCGGCAA GGCGATCGAA
TTCTGGCTGA CGCCGCCCAA GGGGCTGGCG CGCTATATCG CCCACAAAGG CTCTATCACC
ATAGATGGTG TCAGCTTGAC GGTGAACGAG GTGGACGGCG AGCGTTTTCG TCTGACCATA
GTGCCCCATA CCGCCAGCGA AACCACGCTT ATCGATTTGA AGGCGGGCGA CAGGGTCAAT
ATCGAGGTGG ATCTGATCGC CCGGCACCTG GAGCGCCTAC TGAGTTTTCA GGCGGCAGAG
GAAAATCCAG CCAAAGGCTC AGAGGTCACC ATGGATCTGT TAGCTCGCTC CGGCTTTTTA
AGATAG
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| Protein sequence | MFTGIIEAVG SLRKIERRGD DIRLTVASGK LDLSDVKLGD SIATNGVCLT VVEQMADGYV
ADISAETVAL TGFAHYQVGQ KVNLEKAVTP TTRLGGHMVS GHVDGVASVD DRQYRGKAIE
FWLTPPKGLA RYIAHKGSIT IDGVSLTVNE VDGERFRLTI VPHTASETTL IDLKAGDRVN
IEVDLIARHL ERLLSFQAAE ENPAKGSEVT MDLLARSGFL R
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